质粒名称: | AAV-P(Cry1)-DIO-intron336-Venus-NLS-D2 |
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出品公司: | 爱迪基因 |
目录编号: | 110055 |
存储实验室: | Eric Erquan Zhang |
载体骨架基本信息 |
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载体名称: | aav2 |
载体出品公司: | -- |
载体抗性: | 氨苄青霉素 |
空载体大小: | 4171 bp |
完整质粒大小: | 7683 bp |
载体修饰: | -- |
载体类型: | 哺乳动物表达,AAV,Cre/Lox |
筛选标记: | -- |
高拷贝/低拷贝: | 高拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | Cry1 promoter and Venus,Cry1 intron336 |
物种来源: | M. musculus (mouse) |
插入大小: | -- |
基因突变: | -- |
GenBank编号 | -- |
启动子 | Cry1 |
标签/融合蛋白: | NLS-D2 (C terminal on insert) |
克隆方法: | Gibson 克隆 |
5' 克隆位点: | -- |
3' 克隆位点: | -- |
5' 测序引物 | -- |
3' 测序引物 | -- |
文献引用方法 |
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材料和方法部分: | AAV-P(Cry1)-DIO-intron336-Venus-NLS-D2 was a gift from Eric Erquan Zhang (Addgene plasmid # 110055 ; http://n2t.net/addgene:110055 ; RRID:Addgene_110055) |
参考文献部分: | Long-term in vivo recording of circadian rhythms in brains of freely moving mice. Mei L, Fan Y, Lv X, Welsh DK, Zhan C, Zhang EE. Proc Natl Acad Sci U S A. 2018 Apr 2. pii: 1717735115. doi: 10.1073/pnas.1717735115. 10.1073/pnas.1717735115 PubMed 29610316 |
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载体基本信息
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载体简介
载体序列
LOCUS AAV-P(Cry1)-DIO-intron336-Venus-NLS-D2 7672 bp ds-DNA circular SYN 06-AUG-2018 DEFINITION Cry1 transcription fluorescence reporter. ACCESSION . VERSION . KEYWORDS AAV-P(Cry1)-DIO-intron336-Venus-NLS-D2 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 7672) AUTHORS Mei L, Fan Y, Lv X, Welsh DK, Zhan C, Zhang EE TITLE Long-term in vivo recording of circadian rhythms in brains of freely moving mice. JOURNAL Proc Natl Acad Sci U S A. 2018 Apr 2. pii: 1717735115. doi: 10.1073/pnas.1717735115. PUBMED 29610316 REFERENCE 2 (bases 1 to 7672) AUTHORS . TITLE Direct Submission JOURNAL Exported Aug 6, 2018 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..7672 /organism="synthetic DNA construct" /mol_type="other DNA" repeat_region 1..130 /label=AAV2 ITR (alternate) /note="Functional equivalent of wild-type AAV2 ITR" protein_bind 1722..1755 /label=lox2272 /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GGATACTT). lox2272 sites are compatible with each other, but incompatible with loxP or loxN sites." protein_bind 1806..1839 /label=loxP /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GCATACAT)." CDS complement(1989..2009) /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS complement(2013..2726) /codon_start=1 /product="Venus YFP with monomerizing A206K mutation (Nagai et al., 2002)" /label=mVenus /note="mammalian codon-optimized" /translation="VSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLK LICTTGKLPVPWPTLVTTLGYGLQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDG NYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKA NFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSKLSKDPNEKRDHMVLLE FVTAAGITLGMDELYK" primer_bind complement(2055..2076) /label=EGFP-C /note="EGFP, forward primer" primer_bind 2404..2423 /label=EXFP-R /note="For distinguishing EGFP variants, reverse primer" primer_bind 2663..2684 /label=EGFP-N /note="EGFP, reverse primer" CDS complement(2736..2756) /codon_start=1 /product="tobacco etch virus (TEV) protease recognition and cleavage site" /label=TEV site /translation="ENLYFQG" CDS complement(2781..2825) /codon_start=1 /product="peptide tag that allows for enzymatic biotinylation" /label=AviTag(TM) /translation="GLNDIFEAQKIEWHE" CDS complement(2847..2912) /codon_start=1 /product="three tandem FLAG(R) epitope tags, followed by an enterokinase cleavage site" /label=3xFLAG /translation="DYKDHDGDYKDHDIDYKDDDDK" CDS complement(3303..3326) /codon_start=1 /product="FLAG(R) epitope tag, followed by an enterokinase cleavage site" /label=FLAG /translation="DYKDDDDK" regulatory 3326..3335 /regulatory_class="other" /note="vertebrate consensus sequence for strong initiation of translation (Kozak, 1987)" promoter complement(3373..3391) /label=SP6 promoter /note="promoter for bacteriophage SP6 RNA polymerase" primer_bind complement(3374..3391) /label=SP6 /note="SP6 promoter, forward primer" promoter complement(3397..3415) /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" primer_bind complement(3458..3477) /label=pMT2-F /note="Synthetic intron, forward primer" intron 3460..3592 /label=chimeric intron /note="chimera between introns from human beta-globin and immunoglobulin heavy chain genes" protein_bind complement(3657..3690) /label=lox2272 /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GGATACTT). lox2272 sites are compatible with each other, but incompatible with loxP or loxN sites." protein_bind complement(3741..3774) /label=loxP /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GCATACAT)." misc_feature 3799..4387 /label=WPRE /note="woodchuck hepatitis virus posttranscriptional regulatory element" primer_bind complement(3852..3872) /label=WPRE-R /note="WPRE, reverse primer" CDS complement(4270..4281) /codon_start=1 /product="Factor Xa recognition and cleavage site" /label=Factor Xa site /translation="IEGR" polyA_signal 4419..4895 /label=hGH poly(A) signal /note="human growth hormone polyadenylation signal" primer_bind complement(4618..4637) /label=hGH-PA-R /note="Human growth hormone terminator, reverse primer" repeat_region 4935..5075 /label=AAV2 ITR /note="inverted terminal repeat of adeno-associated virus serotype 2" repeat_region 4935..5064 /label=AAV2 ITR rep_origin 5150..5605 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(5237..5256) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 5447..5468 /label=F1ori-F /note="F1 origin, forward primer" primer_bind complement(5622..5641) /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" primer_bind 5741..5763 /label=pGEX 3' /note="pGEX vectors, reverse primer" primer_bind complement(5801..5819) /label=pBRforEco /note="pBR322 vectors, upsteam of EcoRI site, forward primer" promoter 5887..5991 /gene="bla" /label=AmpR promoter CDS 5992..6852 /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind complement(6210..6229) /label=Amp-R /note="Ampicillin resistance gene, reverse primer" rep_origin 7023..7611 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind 7512..7531 /label=pBR322ori-F /note="pBR322 origin, forward primer" ORIGIN 1 cctgcaggca gctgcgcgct cgctcgctca ctgaggccgc ccgggcgtcg ggcgaccttt 61 ggtcgcccgg cctcagtgag cgagcgagcg cgcagagagg gagtggccaa ctccatcact 121 aggggttcct gcggccgcac gcgtgtaaag atgcacatgt ggccctgtgt tctcattaga 181 cttcaattgc tttgataaaa catcatgagc aaaagcaact tggccaggaa ggaaggggtt 241 tgttgccgtt tacagttaat aatccatcgt ggggagaagt cagggcagaa attcaaagca 301 gaaacctgga gatagagggc tgaagcagaa gccatggagg aaagccgttt tggttccctg 361 tggcttcctc agcctgcttc catatacaac ccgcctaggg ctaccagcct aatggtggcg 421 ccacacacac tggtcgggtc cttccacatc actcattaat caagaaagtg cccagacttc 481 cctacaggca acctgatgga agtctttact acaattaagg ttcctcttcc catttaactt 541 cagttgaaga aaaaaaaaaa aaaaaaaaaa aaaagcaaag caaaaagccc aaaaacctaa 601 tcaaaatacc ttctaaacta cacttcatgt aatagattag agttgataaa ttgacgatgt 661 atctacagta ttatgaaatg ctgaatatct gagatcggac ctgtcttctc cagagcttgg 721 gcaaaggtgc ccgccccaaa cagtaaaaaa ggctaacggc gtgatttctg ctcctttcag 781 agcaggggac tccgattaac acctgattga agctgggtga gaggcaggac tgtgcctcgg 841 ttgcctctca cccagcccag caataactct cagggcacac ggaactggct tcagaccttc 901 cacacaaccc ataggaagag ccctgggcgc gctcccgcgt cctagcctct tctcttccac 961 cgcgagagcg cagcgcacgc gcgccgtgcc cggcagagcg cgcgcccgcg agctccccgc 1021 agccccgtgc tcatccgggt ccccgcgagc ctcggccaat ggaggcggct cccggccccg 1081 ggagcagaac tatgcctcct cccccttctc gcggcctgtg gcccccgcga gcggcctggg 1141 gctcaggaga cccgcagagg ctgcgagtcc ggatcccacg cgagaactca ggtcgtgagc 1201 gcccagcgat cgcaaccggt cccgaagcac cgggcgcggc ggcgcacgcg ggggtctgag 1261 ccagtgtagt aaacacactt cagaaacgtg aggtgccggt ggtcacgtgg ggtgcatgcc 1321 gcccaatgag aagccggggg cggggcggag gccgctgacg cggcggagtc acccgggcag 1381 cctcgggacc ggtgaccggc aggcgagcgt cccgcggcct ggagctctag cccgcgctct 1441 ccgagctcgc tgcccactcc gggacgcaca ggccgcgtcg cgcggaggcc gcgtgagctc 1501 gtgtccgttc gtggaggccg cctcgggcgc gccaccgtct tctcgcgggt cgcctcggtt 1561 gggcgaggtt tccgtgacga gcctcccggg gctgctgcga ccagcccggg ccgtcgtggc 1621 ggctcgggcc ccgcgcgctc gcttgcgctc cgggggtctc aggccctgga aggtatgcgt 1681 gtcctccgga cgagatctgc gatctaagtg tcgactccgg aataacttcg tataggatac 1741 tttatacgaa gttatgcaga atggtagctg gattgtagct gctattagca atatgaaacc 1801 tcttaataac ttcgtatagc atacattata cgaagttatg gctacacatt gatcctagca 1861 gaagcacagg ctgcagggtg acggtccatc ccgctctcct gggcacaaga catgggcagc 1921 gtgccatcat cctgctcctc cacctccggc gggaagccat ggctaagctt agaattcacg 1981 gggtcttcta cctttctctt cttttttgga ggcttgtaca gctcgtccat gccgagagtg 2041 atcccggcgg cggtcacgaa ctccagcagg accatgtgat cgcgcttctc gttggggtct 2101 ttgctcagtt tggactggta gctcaggtag tggttgtcgg gcagcagcac ggggccgtcg 2161 ccgatggggg tgttctgctg gtagtggtcg gcgagctgca cgccgccgtc ctcgatgttg 2221 tggcggatct tgaagtttgc cttgatgccg ttcttctgct tgtcggcggt gatatagacg 2281 ttgtggctgt tgtagttgta ctccagcttg tgccccagga tgttgccgtc ctccttgaag 2341 tcgatgccct tcagctcgat gcggttcacc agggtgtcgc cctcgaactt cacctcggcg 2401 cgggtcttgt agttgccgtc gtccttgaag aagatggtgc gctcctggac gtagccttcg 2461 ggcatggcgg acttgaagaa gtcgtgctgc ttcatgtggt cggggtagcg ggcgaagcac 2521 tgcaggccgt agccgagggt ggtcacgagg gtgggccagg gcacgggcag cttgccggtg 2581 gtgcagatca acttcagggt cagcttgccg taggtggcat cgccctcgcc ctcgccggac 2641 acgctgaact tgtggccgtt tacgtcgccg tccagctcga ccaggatggg caccaccccg 2701 gtgaacagct cctcgccctt gctcacacct gcagggccct gaaaatacag gttttcggat 2761 cctgaaccgc ctgccgatcc ctcatgccac tctattttct gagcttcgaa aatatcgttc 2821 aggccgctag ctgcggccgc tccaccctta tcgtcatcgt ccttgtagtc gatgtcatga 2881 tctttataat caccgtcatg gtctttgtag tccatggtgg gtacctcttg acagctctac 2941 cttttactac tataaaaacg tacatgtagt aacttcctta tgccacttcc aaaagatgat 3001 ttcaacatga atcaacagaa atagtttcta aagtaggtca tcgctatagc aaccagtggg 3061 tggtttagca tactcccatc acaatgacct actttctagt ctgtgctagg acagcttata 3121 taactagtat ttctagttct gtctataaaa tagtctgaaa aaggcaatgg caagatacaa 3181 cataatccca ctgctactga aaacaagaca ttatgaattc atataacaca gtcatctgtc 3241 ctatgccata gtttctacac tgtgtcataa caaccatctc gattagggat aacagggtaa 3301 ttcttgtcat cgtcatcctt gtagtccatg gtggcctctc cttcgagtgc aaaaagaaca 3361 agtagcttgt attctatagt gtcacctaaa tgctagccta tagtgagtcg tattaagtac 3421 tctagcctta agagctgtaa ttgaactggg agtggacacc tgtggagaga aaggcaaagt 3481 ggatgtcagt aagaccaata ggtgcctatc agaaacgcaa gagtcttctc tgtctcgaca 3541 agcccagttt ctattggtct ccttaaacct gtcttgtaac cttgatactt acctgcccag 3601 tgcctcacga ccaactttcg ctaccttagg accgttatag ttactgcagc gctagcataa 3661 cttcgtataa agtatcctat acgaagttat ttgccttaac ccagaaatta tcactgttat 3721 tctttagaat ggtgcaaaga ataacttcgt ataatgtatg ctatacgaag ttatgaattc 3781 gatatcaagc ttatcgataa tcaacctctg gattacaaaa tttgtgaaag attgactggt 3841 attcttaact atgttgctcc ttttacgcta tgtggatacg ctgctttaat gcctttgtat 3901 catgctattg cttcccgtat ggctttcatt ttctcctcct tgtataaatc ctggttgctg 3961 tctctttatg aggagttgtg gcccgttgtc aggcaacgtg gcgtggtgtg cactgtgttt 4021 gctgacgcaa cccccactgg ttggggcatt gccaccacct gtcagctcct ttccgggact 4081 ttcgctttcc ccctccctat tgccacggcg gaactcatcg ccgcctgcct tgcccgctgc 4141 tggacagggg ctcggctgtt gggcactgac aattccgtgg tgttgtcggg gaaatcatcg 4201 tcctttcctt ggctgctcgc ctatgttgcc acctggattc tgcgcgggac gtccttctgc 4261 tacgtccctt cggccctcaa tccagcggac cttccttccc gcggcctgct gccggctctg 4321 cggcctcttc cgcgtcttcg ccttcgccct cagacgagtc ggatctccct ttgggccgcc 4381 tccccgcatc gataccgagc gctgctcgag agatctacgg gtggcatccc tgtgacccct 4441 ccccagtgcc tctcctggcc ctggaagttg ccactccagt gcccaccagc cttgtcctaa 4501 taaaattaag ttgcatcatt ttgtctgact aggtgtcctt ctataatatt atggggtgga 4561 ggggggtggt atggagcaag gggcaagttg ggaagacaac ctgtagggcc tgcggggtct 4621 attgggaacc aagctggagt gcagtggcac aatcttggct cactgcaatc tccgcctcct 4681 gggttcaagc gattctcctg cctcagcctc ccgagttgtt gggattccag gcatgcatga 4741 ccaggctcag ctaatttttg tttttttggt agagacgggg tttcaccata ttggccaggc 4801 tggtctccaa ctcctaatct caggtgatct acccaccttg gcctcccaaa ttgctgggat 4861 tacaggcgtg aaccactgct cccttccctg tccttctgat tttgtaggta accacgtgcg 4921 gaccgagcgg ccgcaggaac ccctagtgat ggagttggcc actccctctc tgcgcgctcg 4981 ctcgctcact gaggccgggc gaccaaaggt cgcccgacgc ccgggctttg cccgggcggc 5041 ctcagtgagc gagcgagcgc gcagctgcct gcaggggcgc ctgatgcggt attttctcct 5101 tacgcatctg tgcggtattt cacaccgcat acgtcaaagc aaccatagta cgcgccctgt 5161 agcggcgcat taagcgcggc gggtgtggtg gttacgcgca gcgtgaccgc tacacttgcc 5221 agcgccttag cgcccgctcc tttcgctttc ttcccttcct ttctcgccac gttcgccggc 5281 tttccccgtc aagctctaaa tcgggggctc cctttagggt tccgatttag tgctttacgg 5341 cacctcgacc ccaaaaaact tgatttgggt gatggttcac gtagtgggcc atcgccctga 5401 tagacggttt ttcgcccttt gacgttggag tccacgttct ttaatagtgg actcttgttc 5461 caaactggaa caacactcaa ctctatctcg ggctattctt ttgatttata agggattttg 5521 ccgatttcgg tctattggtt aaaaaatgag ctgatttaac aaaaatttaa cgcgaatttt 5581 aacaaaatat taacgtttac aattttatgg tgcactctca gtacaatctg ctctgatgcc 5641 gcatagttaa gccagccccg acacccgcca acacccgctg acgcgccctg acgggcttgt 5701 ctgctcccgg catccgctta cagacaagct gtgaccgtct ccgggagctg catgtgtcag 5761 aggttttcac cgtcatcacc gaaacgcgcg agacgaaagg gcctcgtgat acgcctattt 5821 ttataggtta atgtcatgat aataatggtt tcttagacgt caggtggcac ttttcgggga 5881 aatgtgcgcg gaacccctat ttgtttattt ttctaaatac attcaaatat gtatccgctc 5941 atgagacaat aaccctgata aatgcttcaa taatattgaa aaaggaagag tatgagtatt 6001 caacatttcc gtgtcgccct tattcccttt tttgcggcat tttgccttcc tgtttttgct 6061 cacccagaaa cgctggtgaa agtaaaagat gctgaagatc agttgggtgc acgagtgggt 6121 tacatcgaac tggatctcaa cagcggtaag atccttgaga gttttcgccc cgaagaacgt 6181 tttccaatga tgagcacttt taaagttctg ctatgtggcg cggtattatc ccgtattgac 6241 gccgggcaag agcaactcgg tcgccgcata cactattctc agaatgactt ggttgagtac 6301 tcaccagtca cagaaaagca tcttacggat ggcatgacag taagagaatt atgcagtgct 6361 gccataacca tgagtgataa cactgcggcc aacttacttc tgacaacgat cggaggaccg 6421 aaggagctaa ccgctttttt gcacaacatg ggggatcatg taactcgcct tgatcgttgg 6481 gaaccggagc tgaatgaagc cataccaaac gacgagcgtg acaccacgat gcctgtagca 6541 atggcaacaa cgttgcgcaa actattaact ggcgaactac ttactctagc ttcccggcaa 6601 caattaatag actggatgga ggcggataaa gttgcaggac cacttctgcg ctcggccctt 6661 ccggctggct ggtttattgc tgataaatct ggagccggtg agcgtgggtc tcgcggtatc 6721 attgcagcac tggggccaga tggtaagccc tcccgtatcg tagttatcta cacgacgggg 6781 agtcaggcaa ctatggatga acgaaataga cagatcgctg agataggtgc ctcactgatt 6841 aagcattggt aactgtcaga ccaagtttac tcatatatac tttagattga tttaaaactt 6901 catttttaat ttaaaaggat ctaggtgaag atcctttttg ataatctcat gaccaaaatc 6961 ccttaacgtg agttttcgtt ccactgagcg tcagaccccg tagaaaagat caaaggatct 7021 tcttgagatc ctttttttct gcgcgtaatc tgctgcttgc aaacaaaaaa accaccgcta 7081 ccagcggtgg tttgtttgcc ggatcaagag ctaccaactc tttttccgaa ggtaactggc 7141 ttcagcagag cgcagatacc aaatactgtt cttctagtgt agccgtagtt aggccaccac 7201 ttcaagaact ctgtagcacc gcctacatac ctcgctctgc taatcctgtt accagtggct 7261 gctgccagtg gcgataagtc gtgtcttacc gggttggact caagacgata gttaccggat 7321 aaggcgcagc ggtcgggctg aacggggggt tcgtgcacac agcccagctt ggagcgaacg 7381 acctacaccg aactgagata cctacagcgt gagctatgag aaagcgccac gcttcccgaa 7441 gggagaaagg cggacaggta tccggtaagc ggcagggtcg gaacaggaga gcgcacgagg 7501 gagcttccag ggggaaacgc ctggtatctt tatagtcctg tcgggtttcg ccacctctga 7561 cttgagcgtc gatttttgtg atgctcgtca ggggggcgga gcctatggaa aaacgccagc 7621 aacgcggcct ttttacggtt cctggccttt tgctggcctt ttgctcacat gt //