质粒名称: | BB3cK_pGAP_23*_pLAT1_Cas9 |
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出品公司: | 爱迪基因 |
目录编号: | 104908 |
存储实验室: | Brigitte Gasser |
载体骨架基本信息 |
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载体名称: | Episomal ARS/CEN Backbone |
载体出品公司: | -- |
载体抗性: | 卡那霉素 |
空载体大小: | -- |
完整质粒大小: | -- |
载体修饰: | -- |
载体类型: | 酵母表达,CRISPR |
筛选标记: | 新霉素(G418) |
高拷贝/低拷贝: | 高拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | HH - FS23 linker - HDV |
物种来源: | -- |
插入大小: | -- |
基因突变: | -- |
GenBank编号 | -- |
启动子 | -- |
标签/融合蛋白: | -- |
克隆方法: | 限制性内切酶 |
5' 克隆位点: | BbsI(未破坏) |
3' 克隆位点: | BbsI (未破坏) |
5' 测序引物 | pGAP fw |
3' 测序引物 | -- |
文献引用方法 |
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材料和方法部分: | BB3cK_pGAP_23*_pLAT1_Cas9 was a gift from Brigitte Gasser (Addgene plasmid # 104908 ; http://n2t.net/addgene:104908 ; RRID:Addgene_104908) |
参考文献部分: | CRISPR/Cas9-Mediated Homology-Directed Genome Editing in Pichia pastoris. Gassler T, Heistinger L, Mattanovich D, Gasser B, Prielhofer R. Methods Mol Biol. 2019;1923:211-225. doi: 10.1007/978-1-4939-9024-5_9. 10.1007/978-1-4939-9024-5_9 PubMed 30737742 |
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载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS BB3cK_pGAP_23*_pLAT1_Cas9 9104 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION hCas9 under control of LAT1 for direct cloning of HH-sgRNA-HDV PCR products for episomal expression in P. pastoris and selection on G418. ACCESSION . VERSION . KEYWORDS BB3cK_pGAP_23*_pLAT1_Cas9 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 9104) AUTHORS Gassler T, Heistinger L, Mattanovich D, Gasser B, Prielhofer R. TITLE CRISPR/Cas9-mediated homology directed genome editing in Pichia pastoris JOURNAL (2018) In Press REFERENCE 2 (bases 1 to 9104) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..9104 /organism="synthetic DNA construct" /mol_type="other DNA" rep_origin complement(70..658) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(150..169) /label=pBR322ori-F /note="pBR322 origin, forward primer" promoter 745..1221 /label=GAP promoter /note="promoter for Pichia pastoris glyceraldehyde-3-phosphate dehydrogenase" CDS 2765..6868 /codon_start=1 /product="Cas9 (Csn1) endonuclease from the Streptococcus pyogenes Type II CRISPR/Cas system" /label=Cas9 /note="generates RNA-guided double strand breaks in DNA" /translation="MDKKYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKK NLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEES FLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIK FRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRL ENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQ IGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSASMIKRYDEHHQDLTLLKALVR QQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLL RKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARG NSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEY FTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFD SVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEER LKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFM QLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGR HKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLY LYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVP SEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKH VAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYL NAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKT EITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSK ESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGI TIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNE LALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILAD ANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVL DATLIHQSITGLYETRIDLSQLGGD" CDS 6881..6901 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" terminator 6973..7220 /gene="S. cerevisiae CYC1" /label=CYC1 terminator /note="transcription terminator for CYC1" primer_bind complement(6989..7007) /label=CYC1 /note="CYC1 transcription termination signal, reverse primer" gene 7240..8596 /label=kanMX /note="yeast selectable marker conferring kanamycin resistance (Wach et al., 1994)" promoter 7240..7583 /label=TEF promoter /note="Ashbya gossypii TEF promoter" CDS 7584..8393 /codon_start=1 /gene="aph(3')-Ia" /product="aminoglycoside phosphotransferase" /label=KanR /note="confers resistance to kanamycin" /translation="MGKEKTHVSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYGKP DAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGKTA FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASD FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD RYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF" primer_bind complement(7651..7670) /label=Kan-R /note="Kanamycin resistance gene, reverse primer" terminator 8399..8596 /label=TEF terminator /note="Ashbya gossypii TEF terminator" misc_feature 8608..7 /label=CEN/ARS /note="S. cerevisiae CEN6 centromere fused to an autonomously replicating sequence" ORIGIN 1 agcgatcgcg ctgtgagcaa aaggccagca aaaggccagg aaccgtaaaa aggccgcgtt 61 gctggcgttt ttccataggc tccgcccccc tgacgagcat cacaaaaatc gacgctcaag 121 tcagaggtgg cgaaacccga caggactata aagataccag gcgtttcccc ctggaagctc 181 cctcgtgcgc tctcctgttc cgaccctgcc gcttaccgga tacctgtccg cctttctccc 241 ttcgggaagc gtggcgcttt ctcatagctc acgctgtagg tatctcagtt cggtgtaggt 301 cgttcgctcc aagctgggct gtgtgcacga accccccgtt cagcccgacc gctgcgcctt 361 atccggtaac tatcgtcttg agtccaaccc ggtaagacac gacttatcgc cactggcagc 421 agccactggt aacaggatta gcagagcgag gtatgtaggc ggtgctacag agttcttgaa 481 gtggtggcct aactacggct acactagaag aacagtattt ggtatctgcg ctctgctgaa 541 gccagttacc ttcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa ccaccgctgg 601 tagcggtggt ttttttgttt gcaagcagca gattacgcgc agaaaaaaag gatctcaaga 661 agatcctttg atcttttcta cggggtggag cgcaaaaaac cccgcccctg acagggcggg 721 gttttttcgc gatcggagga tccttttttg tagaaatgtc ttggtgtcct cgtccaatca 781 ggtagccatc tctgaaatat ctggctccgt tgcaactccg aacgacctgc tggcaacgta 841 aaattctccg gggtaaaact taaatgtgga gtaatggaac cagaaacgtc tcttcccttc 901 tctctccttc caccgcccgt taccgtccct aggaaatttt actctgctgg agagcttctt 961 ctacggcccc cttgcagcaa tgctcttccc agcattacgt tgcgggtaaa acggaggtcg 1021 tgtacccgac ctagcagccc agggatggaa aagtcccggc cgtcgctggc aataatagcg 1081 ggcggacgca tgtcatgaga ttattggaaa ccaccagaat cgaatataaa aggcgaacac 1141 ctttcccaat tttggtttct cctgacccaa agactttaaa tttaatttat ttgtccctat 1201 ttcaatcaat tgaacaacta tcaaaacacc atggcgtctt cggatccctc gaggaagacg 1261 cgcttttagt gtacatctga taatatagta ctaccacgta tgataatgta gagaataggc 1321 ttccttgtcg agtgtgtttg cagttttctt gagtttcaag gtttaaatgc tggtatatta 1381 gttcatcgaa ggtttcagcc aatagcacct taaatcaatc aaactaattc gactcttacg 1441 aaagagccta ctgtgtttag tatcgaagtc gtttaccttt catgttgaat agcttcctct 1501 ctgaccctaa catttcaaga tcctcctaaa gttacccgga ttgtgaaatt ctaatgatcc 1561 acctgcccaa tgcatttttt ctttattcag tttacctttt ttacctaata tacgagcttg 1621 ttaaagtaag tggcactgca atactaggct tattgttgat attatgatga atcgttttca 1681 caaacttgat ttcctgtgaa ctcaccatgt actaaggaaa aaaacatgca tcaccatctg 1741 aatatttgac cgctccgggg agggaagaat atgaaccacg attgaaagac tttgggtttg 1801 ccgattctaa aacacttact gaacagaaaa gaagtgaatt attagagagt ttatgcaacg 1861 gagatcatga gcttagaaag aacgtaggct gggcaacaac atccatttct gcctgcgata 1921 tttccagtgc aatgctaaag ccacataata taggcaatta caacttgaat gagcaggctc 1981 atgatgtcac catggaactg atagataaag tcatccaaaa aggtgtcaat ttacggcacg 2041 tctacgtaga tactgtcgga cctccagcat cataccaaaa gaaactgcaa caaaggtttc 2101 ccgcactgct gatcaccgta tctaaaaaag cagatgccat ctatccatgt gtttcaagtg 2161 cttcagtttg cgccaaggtc actagagacg tctgtttgag aacctcaaat ggggaggaga 2221 acctattaga ttgtgggtct ggatatccct cggacccaaa tactaagaaa tggctagccc 2281 agtctataca tccattgttt ggctggagtc gtgatgtcag gttttcgtgg cagacggcca 2341 aagattgtct tgagagacac aactcaatca aagttgtgtt tggcgaagag gagcctaccc 2401 cggttaattt cggtgatctg gggttgagca aacagaagcc cgactttaag gatttagaaa 2461 tcagtaccag ttggtgggga cattaattgg tggaggagag ccaatattct caactgttcg 2521 taggaccata accccccact cgcaccagaa atactcattg gcgctgacaa ctagtttgag 2581 ccgcttcaat tgcggcaagt ccccagtttt gtttggtact cccctctcgc ctcgcgtgtt 2641 tttgttcctc cgaattgtgc atcaccctgt cacatccgta caccatcgga acactctgct 2701 cctcctcctt tctcctctta attgaacgta tatctaatta ccctaataac aagtatcttc 2761 aaccatggac aagaagtact ccattgggct cgatatcggc acaaacagcg tcggttgggc 2821 cgtcattacg gacgagtaca aggtgccgag caaaaaattc aaagttctgg gcaataccga 2881 tcgccacagc ataaagaaga acctcattgg cgccctcctg ttcgactccg gggagacggc 2941 cgaagccacg cggctcaaaa gaacagcacg gcgcagatat acccgcagaa agaatcggat 3001 ctgctacctg caggagatct ttagtaatga gatggctaag gtggatgact ctttcttcca 3061 taggctggag gagtcctttt tggtggagga ggataaaaag cacgagcgcc acccaatctt 3121 tggcaatatc gtggacgagg tggcgtacca tgaaaagtac ccaaccatat atcatctgag 3181 gaagaagctt gtagacagta ctgataaggc tgacttgcgg ttgatctatc tcgcgctggc 3241 gcatatgatc aaatttcggg gacacttcct catcgagggg gacctgaacc cagacaacag 3301 cgatgtcgac aaactcttta tccaactggt tcagacttac aatcagcttt tcgaagagaa 3361 cccgatcaac gcatccggag ttgacgccaa agcaatcctg agcgctaggc tgtccaaatc 3421 ccggcggctc gaaaacctca tcgcacagct ccctggggag aagaagaacg gcctgtttgg 3481 taatcttatc gccctgtcac tcgggctgac ccccaacttt aaatctaact tcgacctggc 3541 cgaagatgcc aagcttcaac tgagcaaaga cacctacgat gatgatctcg acaatctgct 3601 ggcccagatc ggcgaccagt acgcagacct ttttttggcg gcaaagaacc tgtcagacgc 3661 cattctgctg agtgatattc tgcgagtgaa cacggagatc accaaagctc cgctgagcgc 3721 tagtatgatc aagcgctatg atgagcacca ccaagacttg actttgctga aggcccttgt 3781 cagacagcaa ctgcctgaga agtacaagga aattttcttc gatcagtcta aaaatggcta 3841 cgccggatac attgacggcg gagcaagcca ggaggaattt tacaaattta ttaagcccat 3901 cttggaaaaa atggacggca ccgaggagct gctggtaaag cttaacagag aagatctgtt 3961 gcgcaaacag cgcactttcg acaatggaag catcccccac cagattcacc tgggcgaact 4021 gcacgctatc ctcaggcggc aagaggattt ctaccccttt ttgaaagata acagggaaaa 4081 gattgagaaa atcctcacat ttcggatacc ctactatgta ggccccctcg cccggggaaa 4141 ttccagattc gcgtggatga ctcgcaaatc agaagagact atcactccct ggaacttcga 4201 ggaagtcgtg gataaggggg cctctgccca gtccttcatc gaaaggatga ctaactttga 4261 taaaaatctg cctaacgaaa aggtgcttcc taaacactct ctgctgtacg agtacttcac 4321 agtttataac gagctcacca aggtcaaata cgtcacagaa gggatgagaa agccagcatt 4381 cctgtctgga gagcagaaga aagctatcgt ggacctcctc ttcaagacga accggaaagt 4441 taccgtgaaa cagctcaaag aggactattt caaaaagatt gaatgtttcg actctgttga 4501 aatcagcgga gtggaggatc gcttcaacgc atccctggga acgtatcacg atctcctgaa 4561 aatcattaaa gacaaggact tcctggacaa tgaggagaac gaggacattc ttgaggacat 4621 tgtcctcacc cttacgttgt ttgaagatag ggagatgatt gaagaacgct tgaaaactta 4681 cgctcatctc ttcgacgaca aagtcatgaa acagctcaag aggcgccgat atacaggatg 4741 ggggcggctg tcaagaaaac tgatcaatgg gatccgagac aagcagagtg gaaagacaat 4801 cctggatttt cttaagtccg atggatttgc caaccggaac ttcatgcagt tgatccatga 4861 tgactctctc acctttaagg aggacatcca gaaagcacaa gtttctggcc agggggacag 4921 ccttcacgag cacatcgcta atcttgcagg tagcccagct atcaaaaagg gaatactgca 4981 gaccgttaag gtcgtggatg aactcgtcaa agtaatggga aggcataagc ccgagaatat 5041 cgttatcgag atggcccgag agaaccaaac tacccagaag ggacagaaga acagtaggga 5101 aaggatgaag aggattgaag agggtataaa agaactgggg tcccaaatcc ttaaggaaca 5161 cccagttgaa aacacccagc ttcagaatga gaagctctac ctgtactacc tgcagaacgg 5221 cagggacatg tacgtggatc aggaactgga catcaatcgg ctctccgact acgacgtgga 5281 tcatatcgtg ccccagtctt ttctcaaaga tgattctatt gataataaag tgttgacaag 5341 atccgataaa aatagaggga agagtgataa cgtcccctca gaagaagttg tcaagaaaat 5401 gaaaaattat tggcggcagc tgctgaacgc caaactgatc acacaacgga agttcgataa 5461 tctgactaag gctgaacgag gtggcctgtc tgagttggat aaagccggct tcatcaaaag 5521 gcagcttgtt gagacacgcc agatcaccaa gcacgtggcc caaattctcg attcacgcat 5581 gaacaccaag tacgatgaaa atgacaaact gattcgagag gtgaaagtta ttactctgaa 5641 gtctaagctc gtctcagatt tcagaaagga ctttcagttt tataaggtga gagagatcaa 5701 caattaccac catgcgcatg atgcctacct gaatgcagtg gtaggcactg cacttatcaa 5761 aaaatatccc aagcttgaat ctgaatttgt ttacggagac tataaagtgt acgatgttag 5821 gaaaatgatc gcaaagtctg agcaggaaat aggcaaggcc accgctaagt acttctttta 5881 cagcaatatt atgaattttt tcaagaccga gattacactg gccaatggag agattcggaa 5941 gcgaccactt atcgaaacaa acggagaaac aggagaaatc gtgtgggaca agggtaggga 6001 tttcgcgaca gtccggaagg tcctgtccat gccgcaggtg aacatcgtta aaaagaccga 6061 agtacagacc ggaggcttct ccaaggaaag tatcctcccg aaaaggaaca gcgacaagct 6121 gatcgcacgc aaaaaagatt gggaccccaa gaaatacggc ggattcgatt ctcctacagt 6181 cgcttacagt gtactggttg tggccaaagt ggagaaaggg aagtctaaaa aactcaaaag 6241 cgtcaaggaa ctgctgggca tcacaatcat ggagcgatca agcttcgaaa aaaaccccat 6301 cgactttctc gaggcgaaag gatataaaga ggtcaaaaaa gacctcatca ttaagcttcc 6361 caagtactct ctctttgagc ttgaaaacgg ccggaaacga atgctcgcta gtgcgggcga 6421 gctgcagaaa ggtaacgagc tggcactgcc ctctaaatac gttaatttct tgtatctggc 6481 cagccactat gaaaagctca aagggtcccc cgaagataat gagcagaagc agctgttcgt 6541 ggaacaacac aaacactacc ttgatgagat catcgagcaa ataagcgaat tctccaaaag 6601 agtgatcctc gccgacgcta acctcgataa ggtgctttct gcttacaata agcacaggga 6661 taagcccatc agggagcagg cagaaaacat tatccacttg tttactctga ccaacttggg 6721 cgcgcctgca gccttcaagt acttcgacac caccatagac agaaagcggt acacctctac 6781 aaaggaggtc ctggacgcca cactgattca tcagtcaatt acggggctct atgaaacaag 6841 aatcgacctc tctcagctcg gtggagacag cagggctgac cccaagaaga agaggaaggt 6901 gtgagcttcg tccgacggcg gcccgacggg tccgaggcct cggagatccg tccccctttt 6961 cctttgtcga tatcatgtaa ttagttatgt cacgcttaca ttcacgccct ccccccacat 7021 ccgctctaac cgaaaaggaa ggagttagac aacctgaagt ctaggtccct atttattttt 7081 ttatagttat gttagtatta agaacgttat ttatatttca aatttttctt ttttttctgt 7141 acagacgcgt gtacgcatgt aacattatac tgaaaacctt gcttgagaag gttttgggac 7201 gctcgaaggc tttaatttgc aagctggcgc taattcatgg acatggaggc ccagaatacc 7261 ctccttgaca gtcttgacgt gcgcagctca ggggcatgat gtgactgtcg cccgtacatt 7321 tagcccatac atccccatgt ataatcattt gcatccatac attttgatgg ccgcacggcg 7381 cgaagcaaaa attacggctc ctcgctgcag acgtgcgagc agggaaacgc tcccctcaca 7441 gacgcgttga attgtcccca cgccgcgccc ctgtagagaa atataaaagg ttaggatttg 7501 ccactgaggt tcttctttca tatacttcct tttaaaatct tgctaggata cagttctcac 7561 atcacatccg aacataaaca accatgggta aggaaaagac tcacgtttcg aggccgcgat 7621 taaattccaa catggatgct gatttatatg ggtataaatg ggctcgcgat aatgtcgggc 7681 aatcaggtgc gacaatctat cgattgtatg ggaagcccga tgcgccagag ttgtttctga 7741 aacatggcaa aggtagcgtt gccaatgatg ttacagatga gatggtcaga ctaaactggc 7801 tgacggaatt tatgcctctt ccgaccatca agcattttat ccgtactcct gatgatgcat 7861 ggttactcac cactgcgatc cccggcaaaa cagcattcca ggtattagaa gaatatcctg 7921 attcaggtga aaatattgtt gatgcgctgg cagtgttcct gcgccggttg cattcgattc 7981 ctgtttgtaa ttgtcctttt aacagcgatc gcgtatttcg tctcgctcag gcgcaatcac 8041 gaatgaataa cggtttggtt gatgcgagtg attttgatga cgagcgtaat ggctggcctg 8101 ttgaacaagt ctggaaagaa atgcataagc ttttgccatt ctcaccggat tcagtcgtca 8161 ctcatggtga tttctcactt gataacctta tttttgacga ggggaaatta ataggttgta 8221 ttgatgttgg acgagtcgga atcgcagacc gataccagga tcttgccatc ctatggaact 8281 gcctcggtga gttttctcct tcattacaga aacggctttt tcaaaaatat ggtattgata 8341 atcctgatat gaataaattg cagtttcatt tgatgctcga tgagtttttc taatcagtac 8401 tgacaataaa aagattcttg ttttcaagaa cttgtcattt gtatagtttt tttatattgt 8461 agttgttcta ttttaatcaa atgttagcgt gatttatatt ttttttcgcc tcgacatcat 8521 ctgcccagat gcgaagttaa gtgcgcagaa agtaatatca tgcgtcaatc gtatgtgaat 8581 gctggtcgct atactggctt ccttttcatc acgtgctata aaaataatta taatttaaat 8641 tttttaatat aaatatataa attaaaaata gaaagtaaaa aaagaaatta aagaaaaaat 8701 agtttttgtt ttccgaagat gtaaaagact ctagggggat cgccaacaaa tactaccttt 8761 tatcttgctc ttcctgctct caggtattaa tgccgaattg tttcatcttg tctgtgtaga 8821 acaccacaca cgaaaatcct gtgattttac attttactta tcgttaatcg aatgtatatc 8881 tatttaatct gcttttcttg tctaataaat atatatgtaa agtacgcttt ttgttgaaat 8941 tttttaaacc tttgtttatt tttttttctt cattccgtaa ctcttctacc ttctttattt 9001 actttctaaa atccaaatac aaaacataaa aataaataaa cacagagtaa attcccaaat 9061 tattccatca ttaaaagata cgaggcgcgt gtaagttaca ggca //
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