质粒名称: | NM1-5S-tRNA-SgH |
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出品公司: | Addgene |
目录编号: | 128178 |
存储实验室: | Huimin Zhao |
载体骨架基本信息 |
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载体名称: | pZPK |
载体出品公司: | -- |
空载体大小: | 6303 bp |
完整质粒大小: | 9317 bp |
载体修饰: | 在LB和RB之间添加了弓形虫潮霉素抗性基因。在LB和潮霉素抗性基因之间添加R.toruloides 5S rRNA tRNA(Arg)启动子和polyT终止子。 |
载体类型: | 酵母表达,CRISPR |
筛选标记: | 潮霉素 |
载体抗性: | 卡那霉素,50μg/mL |
生长温度: | 37 ℃ |
宿主菌: | DH5a |
拷贝数: | -- |
插入基因信息 |
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插入基因名称: | gRNA cloning cassette |
物种来源: | 圆红冬孢酵母菌 |
插入大小: | 951 bp |
基因突变: | -- |
GenBank编号 | -- |
启动子: | 5S rRNA tRNA(精氨酸) |
标签/融合蛋白: | -- |
克隆方法: | 限制性内切酶 |
5’克隆位点: | BbsI(在克隆过程中被破坏) |
3’克隆位点: | BbsI(在克隆过程中被破坏) |
5’测序引物 | CAAATTGACGCTTAGACAAC |
3’测序引物 | TATATCCTGTCAAACACTGATAG |
文献引用方法 |
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材料和方法部分: | NM1-5S-tRNA-SgH was a gift from Huimin Zhao (Addgene plasmid # 128178 ; http://n2t.net/addgene:128178 ; RRID:Addgene_128178) |
参考文献部分: | Development of a CRISPR/Cas9 system for high efficiency multiplexed gene deletion in Rhodosporidium toruloides. Schultz JC, Cao M, Zhao H. Biotechnol Bioeng. 2019 Apr 30. doi: 10.1002/bit.27001. 10.1002/bit.27001 PubMed 31038202 |
买家导航
载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS NM1-5S-tRNA-SgH 9382 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION Expresses gRNA using fusion of R. toruloides 5S rRNA and tRNA-Arg as promoter. ACCESSION . VERSION . KEYWORDS NM1-5S-tRNA-SgH SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 9382) AUTHORS Schultz JC, Cao M, Zhao H TITLE Development of a CRISPR/Cas9 system for high efficiency multiplexed gene deletion in Rhodosporidium toruloides. JOURNAL Biotechnol Bioeng. 2019 Apr 30. doi: 10.1002/bit.27001. PUBMED 31038202 REFERENCE 2 (bases 1 to 9382) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.biofeng.com FEATURES Location/Qualifiers source 1..9382 /organism="synthetic DNA construct" /mol_type="other DNA" misc_feature 47..71 /label=LB T-DNA repeat /note="left border repeat from nopaline C58 T-DNA" misc_RNA 355..430 /label=gRNA scaffold /note="guide RNA scaffold for the Streptococcus pyogenes CRISPR/Cas9 system" CDS 2896..2913 /codon_start=1 /product="6xHis affinity tag" /label=6xHis /translation="HHHHHH" terminator 2917..3169 /label=NOS terminator /note="nopaline synthase terminator and poly(A) signal" misc_feature 3270..3294 /label=RB T-DNA repeat /note="right border repeat from nopaline C58 T-DNA" CDS 4607..5236 /codon_start=1 /product="stability protein from the Pseudomonas plasmid pVS1 (Heeb et al., 2000)" /label=pVS1 StaA /translation="MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSAR DWAAVREDQPLTVVGIDRPTIDRDVKAIGRRDFVVIDGAPQAADLAVSAIKAADFVLIP VQPSPYDIWATADLVELVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVAEALAGYELPI LESRITQRVSYPGTAAAGTTVLESEPEGDAAREVQALAAEIKSKLI" CDS 5665..6738 /codon_start=1 /product="replication protein from the Pseudomonas plasmid pVS1 (Heeb et al., 2000)" /label=pVS1 RepA /translation="MSGRKPSGPVQIGAALGDDLVEKLKAAQAAQRQRIEAEARPGESW QAAADRIRKESRQPPAAGAPSIRKPPKGDEQPDFFVPMLYDVGTRDSRSIMDVAVFRLS KRDRRAGEVIRYELPDGHVEVSAGPAGMASVWDYDLVLMAVSHLTESMNRYREGKGDKP GRVFRPHVADVLKFCRRADGGKQKDDLVETCIRLNTTHVAMQRTKKAKNGRLVTVSEGE ALISRYKIVKSETGRPEYIEIELADWMYREITEGKNPDVLTVHPDYFLIDPGIGRFLYR LARRAAGKAEARWLFKTIYERSGGAGEFKKFCFTVRKLIGSNDLPEYDLKEEAGQAGPI LVMRYRNLIEGEASAGS" rep_origin 6804..6998 /label=pVS1 oriV /note="origin of replication for the Pseudomonas plasmid pVS1 (Heeb et al., 2000)" primer_bind complement(7234..7256) /label=pGEX 3' /note="pGEX vectors, reverse primer" misc_feature 7342..7482 /label=bom /note="basis of mobility region from pBR322" primer_bind 7397..7416 /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" primer_bind complement(7497..7514) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(7668..8256) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(7748..7767) /label=pBR322ori-F /note="pBR322 origin, forward primer" primer_bind complement(8367..8386) /label=pENTR-R /note="pENTR vectors, reverse primer" CDS 8378..9193 /codon_start=1 /gene="aph(3')-Ia" /product="aminoglycoside phosphotransferase" /label=KanR /note="confers resistance to kanamycin in bacteria or G418 (Geneticin(R)) in eukaryotes" /translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF" primer_bind complement(8451..8470) /label=Kan-R /note="Kanamycin resistance gene, reverse primer" ORIGIN 1 gtgattttgt gccgagctgc cggtcgggga gctgttggct ggctggtggc aggatatatt 61 gtggtgtaaa caaattgacg cttagacaac ttaataacac attgcggacg tttttaatgt 121 actgaattaa cgccgaattg aattcatctg cggccatacc gcgatgaaca caccgcgtct 181 cgtccgatcc gcgaagttaa gcatcgcagg ggccagagag tattgccgtg ggtgaccagg 241 cgagaacact gtgctgccgc aggtggcggt gtggccaagt ggcacggcac ctgtttccgg 301 cgcaggagat cgagggttcg atccccttca ccgtcgaggt cttcaggaag acgagtttta 361 gagctagaaa tagcaagtta aaataaggct agtccgttat caacttgaaa aagtggcacc 421 gagtcggtgc tttttttttg gtacccgggc tgcagaacta cgccctctca cacccaactt 481 ccgactcgac cggcggtacg agcacgacct acttctactg cctgccatcg acatccgggc 541 gggtcgctgc ctaccctgtg cgttctgcgc cctccctcgt ctcgggaggc agtgtctgac 601 agaagctttg cgcgcagtac cccgtcaaga tgcaactcta cgcaacgttc ggcacagaag 661 tcgccaagct ccgcgcatcg ccgcctcaag ctctcgcgct gcccgacggt gtcgtctatt 721 acgaggcgga gaagctcgag ttgccggctt tgccagcggc ggtcaaggtt gaggtggaga 781 cggagaaggc gggagtagcg ggggaggaca atgaggcgaa gggtgagatg gtgctggtgg 841 agactcttac ggtggagcag gaggagattg aattgggctc gggagtcgtg cagattgagg 901 agtcgttgct cgtcaagctg gaggtcagcg gctgatcctt ccgttcgttg caaggatcgt 961 ctgcatgttt cgcttctctc aatgacacaa cctggagagc gctcccgtca gcgagaatcg 1021 aggacattcc gcagctcgtg agcaagcgga ggtgcgaggc tccctcgaaa gctgcgcctc 1081 ttcagacggc ttgttctctc ctgctctggt gggctggcct gacatgtaat gtgctccgcc 1141 gcaagtccgt cgtcggtctc aattcgacgt tgaaagggca tagcgcaagg aagaaccctc 1201 tgcggacatg cagaattact ggctcgcctg ctccttcgtc tactggaata agtcctgtct 1261 cgttaaagcc ccaacgtcgt ttttcgacgt ttgtaaggcg caagaggtgc tatgggctac 1321 gcaggaagct gagaggacat agaagtcggg ggaggaacgg cgcagagcgg cagttgcgga 1381 agcatgagga aagcgagacg gtccagcatc tgcagcgcca atccgcaatc tcctggttga 1441 gcctgcaccg gaagcgtcgg aacagtatgc gcagagtcga acgcaagtaa gaaagacgca 1501 ccctcacact cgcttacttc gagccataca acggatcaaa gctgcgcgta tctcggcttg 1561 taagggccgg aaagcaacct cggagatgga cacgtcacat caccaactta tcgatctcgg 1621 ccgtcgacgt cgcagagagg gcgagagaag cggtgaagga gggaaacaac ccctcgagag 1681 catgatccga ccgaatctgc agcgcaggaa gccgttacaa gcccgcctcg agcgcaggtc 1741 gggtccagcc gggggacgaa acgcgcgagg ctgattcgtg agcgaaggaa gccgcatcga 1801 caagttcgct cccctttgcc ctctttccca tcacccgttc tcgccttacc cgctcagaac 1861 aacaccagat cactcacaat gccggagctc atggcgacgt cggtcgagaa gttcctcatc 1921 gaaaagttcg actcggtctc ggacctcatg caactctcgg agggagagga atcgcgcgcg 1981 ttctcgttcg acgtcggagg ccgcggatac gtcctccgcg tcaactcgtg tgcggacgga 2041 ttctacaagg atcggtacgt ctaccgccat tttgcgtcgg cggcgctccc gatccccgaa 2101 gtcctcgaca tcggagagtt ctcggaatcc ctcacgtact gtatctcgcg ccgggcgcaa 2161 ggagtcacgc tccaagatct cccggagacg gaactcccgg cggtcctcca accggtcgcg 2221 gaagcgatgg acgcgatcgc ggccgcggac ctctcgcaaa cgtcgggatt cggaccgttt 2281 ggaccgcaag gaatcggaca atacacgacg tggcgcgact tcatctgtgc gatcgcggat 2341 ccccatgtct accactggca aacggtcatg gatgacacgg tctcggcgtc ggtcgcgcaa 2401 gcgctcgacg agctcatgct ctgggcggag gactgtccgg aggtccgcca cctcgtccac 2461 gcggactttg gatcgaacaa cgtcctcacg gacaacggac gcatcacggc ggtcatcgac 2521 tggtcggagg cgatgtttgg agactcgcaa tacgaggtcg cgaacatctt cttctggcgc 2581 ccgtggctcg cgtgcatgga gcaacagacg cgctacttcg agcgccgcca cccggagctc 2641 gcgggatcgc cgcgcctccg cgcgtacatg ctccgcatcg gcctcgacca actctaccag 2701 tcgctcgtcg acggaaactt cgacgatgcc gcgtgggccc aaggacgctg cgacgcgatt 2761 gtccgctcgg gagcgggaac cgtgggacgc acgcaaattg cgcggcgctc ggcggccgtc 2821 tggacggatg gatgtgtcga agtcctcgcg gattcgggaa accggcgccc gtcgacgcgc 2881 ccgcgggcga aagaacacca ccatcaccat cactaggatc gttcaaacat ttggcaataa 2941 agtttcttaa gattgaatcc tgttgccggt cttgcgatga ttatcatata atttctgttg 3001 aattacgtta agcatgtaat aattaacatg taatgcatga cgttatttat gagatgggtt 3061 tttatgatta gagtcccgca attatacatt taatacgcga tagaaaacaa aatatagcgc 3121 gcaaactagg ataaattatc gcgcgcggtg tcatctatgt tactagatcg ggcctggatc 3181 ctctagagtc gacctgcagc atgcaagctt ggcagcttga gcttggatca gattgtcgtt 3241 tcccgccttc agtttaaact atcagtgttt gacaggatat attggcgggt aaacctaaga 3301 gaaaagagcg tttattagaa taatcggata tttaaaaggg cgtgaaaagg tttatccgtt 3361 cgtccatttg tatgtgcatg ccaaccacag ggttcccctc gggatcaaag tactttaaag 3421 tactttaaag tactttaaag tactttgatc caacccctcc gctgctatag tgcagtcggc 3481 ttctgacgtt cagtgcagcc gtcgcacaag tcctaagtta cgcgacaggc tgccgccctg 3541 cccttttcct ggcgttttct tgtcgcgtgt tttagtcgca taaagtagaa tacttgcgac 3601 tagaaccgga gacattacgc catgaacaag agcgccaccg ctggcctgct gggctatgcc 3661 cgcgtcagca ccgacgacca ggacttgacc aaccaacggg ccgaactgca cgcggccggc 3721 tgcaccaagc tgttttccga gaagatcacc ggcaccaggc gcgaccgccc ggagctggcc 3781 aggatgcttg accacctacg ccctggcgac gttgtgacag tgaccaggct agaccgcctg 3841 gcccgcagca cccgcgacct actggacatt gccgagcgca tccaggaggc cggcgcgggc 3901 ctgcgtagcc tggcagagcc gtgggccgac accaccacgc cggccggccg catggtgttg 3961 accgtgttcg ccggcattgc cgagttcgag cgttccctaa tcatcgaccg cacccggagc 4021 gggcgcgagg ccgccaaggc ccgaggcgtg aagtttggcc cccgccctac cctcaccccg 4081 gcacagatcg cgcacgcccg cgagctgatc gaccaggaag gccgcaccgt gaaagaggcg 4141 gctgcactgc ttggcgtgca tcgctcgacc ctgtaccgcg cacttgagcg cagcgaggaa 4201 gtgacgccca ccgaggccag gcggcgcggt gccttccgtg aggacgcatt gaccgaggcc 4261 gacgccctgg cggccgccga gaatgaacgc caagaggaac aagcatgaaa ccgcaccagg 4321 acggccagga cgaaccgttt ttcattaccg aagagatcga ggcggagatg atcgcggccg 4381 ggtacgtgtt cgagccgccc gcgcacgtct caaccgtgcg gctgcatgaa atcctggccg 4441 gtttgtctga tgccaagctg gcggcctggc cggccagctt ggccgctgaa gaaaccgagc 4501 gccgccgtct aaaaaggtga tgtgtatttg agtaaaacag cttgcgtcat gcggtcgctg 4561 cgtatatgat gcgatgagta aataaacaaa tacgcaaggg gaacgcatga aggttatcgc 4621 tgtacttaac cagaaaggcg ggtcaggcaa gacgaccatc gcaacccatc tagcccgcgc 4681 cctgcaactc gccggggccg atgttctgtt agtcgattcc gatccccagg gcagtgcccg 4741 cgattgggcg gccgtgcggg aagatcaacc gctaaccgtt gtcggcatcg accgcccgac 4801 gattgaccgc gacgtgaagg ccatcggccg gcgcgacttc gtagtgatcg acggagcgcc 4861 ccaggcggcg gacttggctg tgtccgcgat caaggcagcc gacttcgtgc tgattccggt 4921 gcagccaagc ccttacgaca tatgggccac cgccgacctg gtggagctgg ttaagcagcg 4981 cattgaggtc acggatggaa ggctacaagc ggcctttgtc gtgtcgcggg cgatcaaagg 5041 cacgcgcatc ggcggtgagg ttgccgaggc gctggccggg tacgagctgc ccattcttga 5101 gtcccgtatc acgcagcgcg tgagctaccc aggcactgcc gccgccggca caaccgttct 5161 tgaatcagaa cccgagggcg acgctgcccg cgaggtccag gcgctggccg ctgaaattaa 5221 atcaaaactc atttgagtta atgaggtaaa gagaaaatga gcaaaagcac aaacacgcta 5281 agtgccggcc gtccgagcgc acgcagcagc aaggctgcaa cgttggccag cctggcagac 5341 acgccagcca tgaagcgggt caactttcag ttgccggcgg aggatcacac caagctgaag 5401 atgtacgcgg tacgccaagg caagaccatt accgagctgc tatctgaata catcgcgcag 5461 ctaccagagt aaatgagcaa atgaataaat gagtagatga attttagcgg ctaaaggagg 5521 cggcatggaa aatcaagaac aaccaggcac cgacgccgtg gaatgcccca tgtgtggagg 5581 aacgggcggt tggccaggcg taagcggctg ggttgtctgc cggccctgca atggcactgg 5641 aacccccaag cccgaggaat cggcgtgagc ggtcgcaaac catccggccc ggtacaaatc 5701 ggcgcggcgc tgggtgatga cctggtggag aagttgaagg ccgcgcaggc cgcccagcgg 5761 caacgcatcg aggcagaagc acgccccggt gaatcgtggc aagcggccgc tgatcgaatc 5821 cgcaaagaat cccggcaacc gccggcagcc ggtgcgccgt cgattaggaa gccgcccaag 5881 ggcgacgagc aaccagattt tttcgttccg atgctctatg acgtgggcac ccgcgatagt 5941 cgcagcatca tggacgtggc cgttttccgt ctgtcgaagc gtgaccgacg agctggcgag 6001 gtgatccgct acgagcttcc agacgggcac gtagaggttt ccgcagggcc ggccggcatg 6061 gccagtgtgt gggattacga cctggtactg atggcggttt cccatctaac cgaatccatg 6121 aaccgatacc gggaagggaa gggagacaag cccggccgcg tgttccgtcc acacgttgcg 6181 gacgtactca agttctgccg gcgagccgat ggcggaaagc agaaagacga cctggtagaa 6241 acctgcattc ggttaaacac cacgcacgtt gccatgcagc gtacgaagaa ggccaagaac 6301 ggccgcctgg tgacggtatc cgagggtgaa gccttgatta gccgctacaa gatcgtaaag 6361 agcgaaaccg ggcggccgga gtacatcgag atcgagctag ctgattggat gtaccgcgag 6421 atcacagaag gcaagaaccc ggacgtgctg acggttcacc ccgattactt tttgatcgat 6481 cccggcatcg gccgttttct ctaccgcctg gcacgccgcg ccgcaggcaa ggcagaagcc 6541 agatggttgt tcaagacgat ctacgaacgc agtggcggcg ccggagagtt caagaagttc 6601 tgtttcaccg tgcgcaagct gatcgggtca aatgacctgc cggagtacga tttgaaggag 6661 gaggcggggc aggctggccc gatcctagtc atgcgctacc gcaacctgat cgagggcgaa 6721 gcatccgccg gttcctaatg tacggagcag atgctagggc aaattgccct agcaggggaa 6781 aaaggtcgaa aaggtctctt tcctgtggat agcacgtaca ttgggaaccc aaagccgtac 6841 attgggaacc ggaacccgta cattgggaac ccaaagccgt acattgggaa ccggtcacac 6901 atgtaagtga ctgatataaa agagaaaaaa ggcgattttt ccgcctaaaa ctctttaaaa 6961 cttattaaaa ctcttaaaac ccgcctggcc tgtgcataac tgtctggcca gcgcacagcc 7021 gaagagctgc aaaaagcgcc tacccttcgg tcgctgcgct ccctacgccc cgccgcttcg 7081 cgtcggccta tcgcggccgc tggccgctca aaaatggctg gcctacggcc aggcaatcta 7141 ccagggcgcg gacaagccgc gccgtcgcca ctcgaccgcc ggcgcccaca tcaaggcacc 7201 ctgcctcgcg cgtttcggtg atgacggtga aaacctctga cacatgcagc tcccggagac 7261 ggtcacagct tgtctgtaag cggatgccgg gagcagacaa gcccgtcagg gcgcgtcagc 7321 gggtgttggc gggtgtcggg gcgcagccat gacccagtca cgtagcgata gcggagtgta 7381 tactggctta actatgcggc atcagagcag attgtactga gagtgcacca tatgcggtgt 7441 gaaataccgc acagatgcgt aaggagaaaa taccgcatca ggcgctcttc cgcttcctcg 7501 ctcactgact cgctgcgctc ggtcgttcgg ctgcggcgag cggtatcagc tcactcaaag 7561 gcggtaatac ggttatccac agaatcaggg gataacgcag gaaagaacat gtgagcaaaa 7621 ggccagcaaa aggccaggaa ccgtaaaaag gccgcgttgc tggcgttttt ccataggctc 7681 cgcccccctg acgagcatca caaaaatcga cgctcaagtc agaggtggcg aaacccgaca 7741 ggactataaa gataccaggc gtttccccct ggaagctccc tcgtgcgctc tcctgttccg 7801 accctgccgc ttaccggata cctgtccgcc tttctccctt cgggaagcgt ggcgctttct 7861 catagctcac gctgtaggta tctcagttcg gtgtaggtcg ttcgctccaa gctgggctgt 7921 gtgcacgaac cccccgttca gcccgaccgc tgcgccttat ccggtaacta tcgtcttgag 7981 tccaacccgg taagacacga cttatcgcca ctggcagcag ccactggtaa caggattagc 8041 agagcgaggt atgtaggcgg tgctacagag ttcttgaagt ggtggcctaa ctacggctac 8101 actagaagga cagtatttgg tatctgcgct ctgctgaagc cagttacctt cggaaaaaga 8161 gttggtagct cttgatccgg caaacaaacc accgctggta gcggtggttt ttttgtttgc 8221 aagcagcaga ttacgcgcag aaaaaaagga tctcaagaag atcctttgat cttttctacg 8281 gggtctgacg ctcagtggaa cgaaaactca cgttaaggga ttttggtcat gaacaataaa 8341 actgtctgct tacataaaca gtaatacaag gggtgttatg agccatattc aacgggaaac 8401 gtcttgctct aggccgcgat taaattccaa catggatgct gatttatatg ggtataaatg 8461 ggctcgcgat aatgtcgggc aatcaggtgc gacaatctat cgattgtatg ggaagcccga 8521 tgcgccagag ttgtttctga aacatggcaa aggtagcgtt gccaatgatg ttacagatga 8581 gatggtcaga ctaaactggc tgacggaatt tatgcctctt ccgaccatca agcattttat 8641 ccgtactcct gatgatgcat ggttactcac cactgcgatc cccgggaaaa cagcattcca 8701 ggtattagaa gaatatcctg attcaggtga aaatattgtt gatgcgctgg cagtgttcct 8761 gcgccggttg cattcgattc ctgtttgtaa ttgtcctttt aacagcgatc gcgtatttcg 8821 tctcgctcag gcgcaatcac gaatgaataa cggtttggtt gatgcgagtg attttgatga 8881 cgagcgtaat ggctggcctg ttgaacaagt ctggaaagaa atgcataaac ttttgccatt 8941 ctcaccggat tcagtcgtca ctcatggtga tttctcactt gataacctta tttttgacga 9001 ggggaaatta ataggttgta ttgatgttgg acgagtcgga atcgcagacc gataccagga 9061 tcttgccatc ctatggaact gcctcggtga gttttctcct tcattacaga aacggctttt 9121 tcaaaaatat ggtattgata atcctgatat gaataaattg cagtttcatt tgatgctcga 9181 tgagtttttc taatcacagg cagcaacgct ctgtcatcgt tacaatcaac atgctaccct 9241 ccgcgagatc atccgtgttt caaacccggc agcttagttg ccgttcttcc gaatagcatc 9301 ggtaacatga gcaaagtctg ccgccttaca acggctctcc cgctgacgcc gtcccggact 9361 gatgggctgc ctgtatcgag tg //