质粒名称: | pCMV-dCpf1-BE-YE |
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出品公司: | Addgene |
目录编号: | 107686 |
存储实验室: | Jia Chen |
载体骨架基本信息 |
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载体名称: | CMV |
完整质粒大小: | 8166bp |
载体类型: | 哺乳细胞表达 |
载体抗性: | 氨苄霉素 |
生长温度: | 37 ℃ |
宿主菌: | DH5a |
拷贝数: | 高拷贝 |
插入基因信息 |
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插入基因名称: | dLbCpf1-BE-YE / pCMV-SV40NLS-APOBEC1(W90Y/R126E)-XTEN-dLbCpf1(D832A/E1006A/D1125A)-SV40NLS-SGGS-UGI-SV40NLS |
物种来源: | R. norvegicus (rat); Lachnospiraceae bacterium Bacteriophage PBS2 |
插入大小: | 4764 bp |
基因突变: | APOBEC1(W90Y/R126E), dLbCpf1(D832A/E925A/D1148A) |
启动子: | CMV |
克隆方法: | Gibson Cloning |
5’克隆位点: | AgeI(未破坏) |
3’克隆位点: | NotI (未破坏) |
5’测序引物 | CMV |
3’测序引物 | BGH poly reverse |
文献引用方法 |
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材料和方法部分: | pCMV-dCpf1-BE-YE was a gift from Jia Chen (Addgene plasmid # 107686 ; http://n2t.net/addgene:107686 ; RRID:Addgene_107686) |
参考文献部分: | Base editing with a Cpf1-cytidine deaminase fusion. Li X, Wang Y, Liu Y, Yang B, Wang X, Wei J, Lu Z, Zhang Y, Wu J, Huang X, Yang L, Chen J. Nat Biotechnol. 2018 Mar 19. pii: nbt.4102. doi: 10.1038/nbt.4102. 10.1038/nbt.4102 PubMed 29553573 |
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载体基本信息
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载体序列
LOCUS pCMV-dCpf1-BE-YE 8166 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION Expresses dLbCpf1-BE-YE in mammalian cells. ACCESSION . VERSION . KEYWORDS pCMV-dCpf1-BE-YE SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8166) AUTHORS Li X, Wang Y, Liu Y, Yang B, Wang X, Wei J, Lu Z, Zhang Y, Wu J, Huang X, Yang L, Chen J TITLE Base editing with a Cpf1-cytidine deaminase fusion. JOURNAL Nat Biotechnol. 2018 Mar 19. pii: nbt.4102. doi: 10.1038/nbt.4102. PUBMED 29553573 REFERENCE 2 (bases 1 to 8166) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.biofeng.com FEATURES Location/Qualifiers source 1..8166 /organism="synthetic DNA construct" /mol_type="other DNA" enhancer 16..395 /label=CMV enhancer /note="human cytomegalovirus immediate early enhancer" promoter 396..599 /label=CMV promoter /note="human cytomegalovirus (CMV) immediate early promoter" primer_bind 550..570 /label=CMV-F /note="Human CMV immediate early promoter, forward primer" primer_bind 641..660 /label=T7 /note="T7 promoter, forward primer" promoter 641..659 /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" CDS 676..696 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS 5122..5142 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS 5155..5403 /codon_start=1 /product="uracil-DNA glycosylase inhibitor from a Bacillus subtilis bacteriophage (Mol et al., 1995)" /label=UGI /translation="TNLSDIIEKETGKQLVIQESILMLPEEVEEVIGNKPESDILVHTA YDESTDENVMLLTSDAPEYKPWALVIQDSNGENKIKML" CDS 5416..5436 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS 5445..5462 /codon_start=1 /product="6xHis affinity tag" /label=6xHis /translation="HHHHHH" primer_bind complement(5485..5502) /label=BGH-rev /note="Bovine growth hormone terminator, reverse primer. Also called BGH reverse" polyA_signal 5491..5715 /label=bGH poly(A) signal /note="bovine growth hormone polyadenylation signal" primer_bind complement(5786..5802) /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5786..5802) /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind complement(5799..5821) /label=M13/pUC Reverse /note="In lacZ gene" protein_bind 5810..5826 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." promoter complement(5834..5864) /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 5879..5900 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." primer_bind complement(6017..6034) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(6188..6776) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(6268..6287) /label=pBR322ori-F /note="pBR322 origin, forward primer" CDS complement(6947..7807) /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind 7570..7589 /label=Amp-R /note="Ampicillin resistance gene, reverse primer" promoter complement(7808..7912) /gene="bla" /label=AmpR promoter primer_bind complement(7991..8010) /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" ORIGIN 1 ccagatatac gcgttgacat tgattattga ctagttatta atagtaatca attacggggt 61 cattagttca tagcccatat atggagttcc gcgttacata acttacggta aatggcccgc 121 ctggctgacc gcccaacgac ccccgcccat tgacgtcaat aatgacgtat gttcccatag 181 taacgccaat agggactttc cattgacgtc aatgggtgga gtatttacgg taaactgccc 241 acttggcagt acatcaagtg tatcatatgc caagtacgcc ccctattgac gtcaatgacg 301 gtaaatggcc cgcctggcat tatgcccagt acatgacctt atgggacttt cctacttggc 361 agtacatcta cgtattagtc atcgctatta ccatggtgat gcggttttgg cagtacatca 421 atgggcgtgg atagcggttt gactcacggg gatttccaag tctccacccc attgacgtca 481 atgggagttt gttttggcac caaaatcaac gggactttcc aaaatgtcgt aacaactccg 541 ccccattgac gcaaatgggc ggtaggcgtg tacggtggga ggtctatata agcagagctg 601 gtttagtgaa ccgtcagatc cgctagagat ccgcggccgc taatacgact cactataggg 661 agagccgcca ccatgcccaa gaagaagagg aaagtcatga gctcagagac tggcccagtg 721 gctgtggacc ccacattgag acggcggatc gagccccatg agtttgaggt attcttcgat 781 ccgagagagc tccgcaagga gacctgcctg ctttacgaaa ttaattgggg gggccggcac 841 tccatttggc gacatacatc acagaacact aacaagcacg tcgaagtcaa cttcatcgag 901 aagttcacga cagaaagata tttctgtccg aacacaaggt gcagcattac ctggtttctc 961 agctacagcc catgcggcga atgtagtagg gccatcactg aattcctgtc aaggtatccc 1021 cacgtcactc tgtttattta catcgcaagg ctgtaccacc acgctgaccc cgaaaatcga 1081 caaggcctgc gggatttgat ctcttcaggt gtgactatcc aaattatgac tgagcaggag 1141 tcaggatact gctggagaaa ctttgtgaat tatagcccga gtaatgaagc ccactggcct 1201 aggtatcccc atctgtgggt acgactgtac gttcttgaac tgtactgcat catactgggc 1261 ctgcctcctt gtctcaacat tctgagaagg aagcagccac agctgacatt ctttaccatc 1321 gctcttcagt cttgtcatta ccagcgactg cccccacaca ttctctgggc caccgggttg 1381 aaaagcggca gcgagactcc cgggacctca gagtccgcca cacccgaaag tatgtcaaag 1441 ctggagaaat tcaccaactg ttatagcctg tctaagaccc tgcgcttcaa ggcaatccca 1501 gtgggcaaga cacaagagaa cattgacaac aaacggctcc tggtggagga tgagaagagg 1561 gctgaagatt acaagggcgt taagaagctg ctggataggt actatctgtc attcatcaac 1621 gatgtcctcc acagtatcaa gctgaagaat ctgaacaatt acatttctct gttccggaag 1681 aagacacgga ccgagaagga gaacaaagag ctggagaatc tggagatcaa cctgaggaaa 1741 gaaatagcta aggctttcaa agggaacgag ggttacaagt ccctgttcaa gaaagacatt 1801 atcgagacta ttctgcctga gttcctggac gataaagatg agatcgccct cgtcaattcc 1861 ttcaatgggt ttaccacagc ctttaccggc ttcttcgaca atagagagaa tatgttctct 1921 gaagaggcca aatccactag catcgccttt cgctgcataa acgagaacct gactaggtac 1981 atcagcaata tggacatctt tgagaaagtc gatgccatat tcgacaaaca tgaggtgcag 2041 gagattaagg agaagatcct gaactcagat tacgatgtcg aagatttctt cgagggagag 2101 ttcttcaact tcgtgctcac acaagagggc attgatgtgt acaatgcaat cattggaggg 2161 ttcgtgacag agagtggcga gaagataaag ggcctgaacg agtatatcaa cctctacaac 2221 cagaaaacca agcagaaact gcctaagttc aagccactgt acaaacaagt gctctcagat 2281 agggaaagcc tgagcttcta cggtgaaggg tatacatcag atgaagaagt gctcgaagtg 2341 ttccgcaaca ccctcaataa gaacagtgaa atcttctctt caatcaagaa gctggagaaa 2401 ctgttcaaga atttcgatga gtactcctct gccggaatct ttgtgaagaa tggccctgca 2461 atatccacta ttagcaaaga catctttggc gagtggaacg ttatcaggga taagtggaat 2521 gccgagtacg atgatattca tctcaagaag aaagccgtgg ttacagagaa atacgaggat 2581 gatagacgca agagctttaa gaagattggt agcttctctc tcgaacagct gcaggagtac 2641 gccgacgctg acctgtcagt cgtggagaaa ctcaaggaga tcataatcca gaaggtggat 2701 gaaatctaca aagtgtatgg aagctctgag aaactcttcg atgcagactt tgttctggag 2761 aagagtctga agaagaacga cgcagtggtt gctatcatga aggacctgct ggattctgtt 2821 aagtctttcg agaattacat taaggcattc tttggtgaag ggaaggagac aaatagggac 2881 gagagcttct atggcgactt tgttctggcc tacgacatcc tcctcaaggt tgaccacatc 2941 tatgacgcta tacggaatta cgttacccag aagccctata gcaaagacaa gttcaagctg 3001 tatttccaga atccacagtt tatgggtggg tgggataaag acaaagaaac agattacagg 3061 gccactatcc tgcggtacgg cagcaaatac tatctggcta tcatggataa gaagtacgcc 3121 aaatgcctcc agaagatcga caaggacgac gtgaacggta actacgagaa gatcaattac 3181 aagctcctgc caggacctaa caagatgctg cccaaggtgt tcttctccaa gaaatggatg 3241 gcctactata acccaagcga ggacattcag aagatataca agaatgggac attcaagaag 3301 ggcgatatgt tcaacctcaa cgactgccac aagctgattg atttcttcaa ggatagcatt 3361 tctcgctatc ccaagtggtc taatgcatac gatttcaact tcagcgagac tgagaagtac 3421 aaagacatcg ctggcttcta ccgggaggtg gaagagcaag gctataaggt gtcattcgaa 3481 tccgcttcta agaaggaagt ggataagctc gtggaagagg gtaagctgta catgttccag 3541 atatacaaca aagacttcag cgataagagc cacggcactc caaacctcca tactatgtat 3601 ttcaagctgc tgtttgacga gaacaaccac ggacagatta ggctgtcagg aggcgcagaa 3661 ctcttcatgc gcagagcttc actgaagaag gaggaactcg ttgtccaccc agccaatagc 3721 cctatagcca ataagaatcc agacaatcct aagaaaacca ctactctgtc ttacgatgtg 3781 tataaggata agagattctc tgaagatcag tacgaactgc acatacccat tgccattaac 3841 aagtgcccta agaacatctt caagattaac acagaggtta gagtgctcct gaaacacgac 3901 gataaccctt atgttatagg cattgctcgc ggagagagaa acctgctgta catcgtcgtg 3961 gtggacggca aaggcaacat cgtggaacag tacagtctca atgaaatcat taacaatttc 4021 aacggaatcc gcattaagac cgactaccat tctctcctcg acaagaagga gaaagaaagg 4081 ttcgaagcaa gacagaattg gacaagtata gagaatatca aagaactgaa ggctgggtac 4141 atctctcagg ttgtgcacaa gatatgtgag ctggtggaga agtacgacgc tgttatcgcc 4201 ctcgcggacc tgaatagcgg cttcaagaac tccagggtga aggtggagaa gcaggtgtat 4261 cagaagttcg agaagatgct gatcgacaag ctcaactata tggtggacaa gaaatccaat 4321 ccttgcgcta ctggtggagc cctgaagggc tatcaaatca ccaataagtt cgaatctttc 4381 aagtctatga gcacccagaa tggcttcatc ttctacatac ccgcatggct gacatccaag 4441 attgatccct ctaccggatt tgttaatctg ctcaagacta agtacacctc tattgctgac 4501 tcaaagaagt tcatatcatc atttgaccgc atcatgtacg tgccagaaga ggacctgttc 4561 gagtttgccc tggattacaa gaatttctct cggactgacg ccgactacat caagaagtgg 4621 aagctctact cttatggtaa tcggattcgc atattccgca atcccaagaa gaataacgtg 4681 ttcgattggg aggaagtttg cctcaccagc gcttacaagg agctgttcaa taagtatggg 4741 attaactacc agcagggcga cataagagcc ctgctgtgcg aacaatctga taaggcattc 4801 tattcctctt tcatggcact gatgtcactg atgctgcaaa tgcgcaattc catcaccgga 4861 agaacagacg tggcctttct gatctctcct gtcaagaact cagatggcat cttctacgat 4921 tcccgcaact atgaagcaca ggagaatgct atcctgccta agaatgccga tgcaaatgga 4981 gcctataaca tcgccagaaa ggtcctctgg gccataggac aattcaagaa agctgaagat 5041 gagaagctgg acaaggtgaa gatcgccatt tcaaacaaag agtggctcga atatgctcag 5101 acctcagtga agcatggatc acccaagaag aaacggaaag tgtctggtgg ttctactaat 5161 ctgtcagata ttattgaaaa ggagaccggt aagcaactgg ttatccagga atccatcctc 5221 atgctcccag aggaggtgga agaagtcatt gggaacaagc cggaaagcga tatactcgtg 5281 cacaccgcct acgacgagag caccgacgag aatgtcatgc ttctgactag cgacgcccct 5341 gaatacaagc cttgggctct ggtcatacag gatagcaacg gtgagaacaa gattaagatg 5401 ctctctggtg gttctcccaa gaagaagagg aaagtctaac cggtcatcat caccatcacc 5461 attgagttta aacccgctga tcagcctcga ctgtgccttc tagttgccag ccatctgttg 5521 tttgcccctc ccccgtgcct tccttgaccc tggaaggtgc cactcccact gtcctttcct 5581 aataaaatga ggaaattgca tcgcattgtc tgagtaggtg tcattctatt ctggggggtg 5641 gggtggggca ggacagcaag ggggaggatt gggaagacaa tagcaggcat gctggggatg 5701 cggtgggctc tatggcttct gaggcggaaa gaaccagctg gggctcgata ccgtcgacct 5761 ctagctagag cttggcgtaa tcatggtcat agctgtttcc tgtgtgaaat tgttatccgc 5821 tcacaattcc acacaacata cgagccggaa gcataaagtg taaagcctag ggtgcctaat 5881 gagtgagcta actcacatta attgcgttgc gctcactgcc cgctttccag tcgggaaacc 5941 tgtcgtgcca gctgcattaa tgaatcggcc aacgcgcggg gagaggcggt ttgcgtattg 6001 ggcgctcttc cgcttcctcg ctcactgact cgctgcgctc ggtcgttcgg ctgcggcgag 6061 cggtatcagc tcactcaaag gcggtaatac ggttatccac agaatcaggg gataacgcag 6121 gaaagaacat gtgagcaaaa ggccagcaaa aggccaggaa ccgtaaaaag gccgcgttgc 6181 tggcgttttt ccataggctc cgcccccctg acgagcatca caaaaatcga cgctcaagtc 6241 agaggtggcg aaacccgaca ggactataaa gataccaggc gtttccccct ggaagctccc 6301 tcgtgcgctc tcctgttccg accctgccgc ttaccggata cctgtccgcc tttctccctt 6361 cgggaagcgt ggcgctttct catagctcac gctgtaggta tctcagttcg gtgtaggtcg 6421 ttcgctccaa gctgggctgt gtgcacgaac cccccgttca gcccgaccgc tgcgccttat 6481 ccggtaacta tcgtcttgag tccaacccgg taagacacga cttatcgcca ctggcagcag 6541 ccactggtaa caggattagc agagcgaggt atgtaggcgg tgctacagag ttcttgaagt 6601 ggtggcctaa ctacggctac actagaagaa cagtatttgg tatctgcgct ctgctgaagc 6661 cagttacctt cggaaaaaga gttggtagct cttgatccgg caaacaaacc accgctggta 6721 gcggtggttt ttttgtttgc aagcagcaga ttacgcgcag aaaaaaagga tctcaagaag 6781 atcctttgat cttttctacg gggtctgacg ctcagtggaa cgaaaactca cgttaaggga 6841 ttttggtcat gagattatca aaaaggatct tcacctagat ccttttaaat taaaaatgaa 6901 gttttaaatc aatctaaagt atatatgagt aaacttggtc tgacagttac caatgcttaa 6961 tcagtgaggc acctatctca gcgatctgtc tatttcgttc atccatagtt gcctgactcc 7021 ccgtcgtgta gataactacg atacgggagg gcttaccatc tggccccagt gctgcaatga 7081 taccgcgaga cccacgctca ccggctccag atttatcagc aataaaccag ccagccggaa 7141 gggccgagcg cagaagtggt cctgcaactt tatccgcctc catccagtct attaattgtt 7201 gccgggaagc tagagtaagt agttcgccag ttaatagttt gcgcaacgtt gttgccattg 7261 ctacaggcat cgtggtgtca cgctcgtcgt ttggtatggc ttcattcagc tccggttccc 7321 aacgatcaag gcgagttaca tgatccccca tgttgtgcaa aaaagcggtt agctccttcg 7381 gtcctccgat cgttgtcaga agtaagttgg ccgcagtgtt atcactcatg gttatggcag 7441 cactgcataa ttctcttact gtcatgccat ccgtaagatg cttttctgtg actggtgagt 7501 actcaaccaa gtcattctga gaatagtgta tgcggcgacc gagttgctct tgcccggcgt 7561 caatacggga taataccgcg ccacatagca gaactttaaa agtgctcatc attggaaaac 7621 gttcttcggg gcgaaaactc tcaaggatct taccgctgtt gagatccagt tcgatgtaac 7681 ccactcgtgc acccaactga tcttcagcat cttttacttt caccagcgtt tctgggtgag 7741 caaaaacagg aaggcaaaat gccgcaaaaa agggaataag ggcgacacgg aaatgttgaa 7801 tactcatact cttccttttt caatattatt gaagcattta tcagggttat tgtctcatga 7861 gcggatacat atttgaatgt atttagaaaa ataaacaaat aggggttccg cgcacatttc 7921 cccgaaaagt gccacctgac gtcgacggat cgggagatcg atctcccgat cccctagggt 7981 cgactctcag tacaatctgc tctgatgccg catagttaag ccagtatctg ctccctgctt 8041 gtgtgttgga ggtcgctgag tagtgcgcga gcaaaattta agctacaaca aggcaaggct 8101 tgaccgacaa ttgcatgaag aatctgctta gggttaggcg ttttgcgctg cttcgcgatg 8161 tacggg //
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