质粒名称: | pKA-142 |
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出品公司: | Addgene |
目录编号: | 79835 |
存储实验室: | Vladislav Verkhusha |
载体骨架基本信息 |
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载体名称: | pFC15K |
载体出品公司: | Promega |
空载体大小: | 2800 bp |
完整质粒大小: | 5000 bp |
载体类型: | 哺乳细胞表达 |
载体抗性: | 卡那霉素 |
生长温度: | 37 ℃ |
宿主菌: | DH5a |
拷贝数: | 低拷贝 |
插入基因信息 |
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插入基因名称: | PpsR2-mVenus-CAAX |
物种来源: | Rhodopseudomonas palustris |
插入大小: | 2200 bp |
基因突变: | RpPpsR2半胱氨酸439变为丝氨酸 |
GenBank编号 | KX063612 CAE26978.1 |
启动子: | CMVd1 |
克隆方法: | 限制性内切酶 |
5’克隆位点: | AsisI(未破坏) |
3’克隆位点: | NotI(未破坏) |
5’测序引物 | ggtaggcgtgtacggtgggag |
3’测序引物 | GCATCACAAATTTCACAAATAAAGC |
文献引用方法 |
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材料和方法部分: | pKA-142 was a gift from Vladislav Verkhusha (Addgene plasmid # 79835 ; http://n2t.net/addgene:79835 ; RRID:Addgene_79835) |
参考文献部分: | A bacterial phytochrome-based optogenetic system controllable with near-infrared light. Kaberniuk AA, Shemetov AA, Verkhusha VV. Nat Methods. 2016 May 9. doi: 10.1038/nmeth.3864. 10.1038/nmeth.3864 PubMed 27159085 |
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pKA142载体基本信息
pKA142载体图谱质粒图谱和多克隆位点信息
pKA142载体简介
pKA142载体序列
LOCUS pKA-142 4987 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION Expresses PpsR2-mVenus-CAAX under CMVd1 promoter. ACCESSION . VERSION . KEYWORDS pKA-142 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 4987) AUTHORS Kaberniuk AA, Shemetov AA, Verkhusha VV TITLE A bacterial phytochrome-based optogenetic system controllable with near-infrared light. JOURNAL Nat Methods. 2016 May 9. doi: 10.1038/nmeth.3864. PUBMED 27159085 REFERENCE 2 (bases 1 to 4987) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..4987 /organism="synthetic DNA construct" /mol_type="other DNA" promoter 1..100 /label=CMVd1 promoter /note="truncated human cytomegalovirus (CMV) immediate early promoter that yields slightly reduced expression relative to the full-length promoter" primer_bind 51..71 /label=CMV-F /note="Human CMV immediate early promoter, forward primer" primer_bind 132..151 /label=T7 /note="T7 promoter, forward primer" promoter 132..150 /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" promoter 156..174 /label=SP6 promoter /note="promoter for bacteriophage SP6 RNA polymerase" primer_bind 156..173 /label=SP6 /note="SP6 promoter, forward primer" regulatory 1661..1670 /regulatory_class="other" /note="vertebrate consensus sequence for strong initiation of translation (Kozak, 1987)" CDS 1667..2383 /codon_start=1 /product="Venus YFP with monomerizing A206K mutation (Nagai et al., 2002; Kremers et al., 2006)" /label=mVenus /note="mammalian codon-optimized" /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL KLICTTGKLPVPWPTLVTTLGYGLQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDD GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIK ANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSKLSKDPNEKRDHMVLL ERVTAAGITLGMDELYK" primer_bind complement(1712..1733) /label=EGFP-N /note="EGFP, reverse primer" primer_bind complement(1973..1992) /label=EXFP-R /note="For distinguishing EGFP variants, reverse primer" polyA_signal 2461..2582 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(2472..2491) /label=EBV-rev /note="SV40 polyA terminator, reverse primer" primer_bind 2526..2545 /label=SV40pA-R /note="SV40 polyA, reverse primer" CDS 2981..3775 /codon_start=1 /gene="aph(3')-II (or nptII)" /product="aminoglycoside phosphotransferase from Tn5" /label=NeoR/KanR /note="confers resistance to neomycin, kanamycin, and G418 (Geneticin(R))" /translation="MLEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF" primer_bind complement(3035..3054) /label=Neo-R /note="Neomycin resistance gene, reverse primer" primer_bind 3645..3664 /label=Neo-F /note="Neomycin resistance gene, forward primer" rep_origin complement(3947..4535) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(4027..4046) /label=pBR322ori-F /note="pBR322 origin, forward primer" misc_feature 4651..4934 /label=cer region /note="ColE1-derived recombination site that helps to maintain plasmids as monomers" ORIGIN 1 ccaaaatcaa cgggactttc caaaatgtcg taataacccc gccccgttga cgcaaatggg 61 cggtaggcgt gtacggtggg aggtctatat aagcagagct ggtttagtga accgtcagat 121 cactagaagc ttaatacgac tcactatagg gtacgattta ggtgacacta tagaataagg 181 agcgatcgcc atggctagcg cgtcaaagtc cgttcatgcc gacatcaccc ttctgctcga 241 tatggagggt gtgattcgcg aagccaccct gtctccgacg atggcggccg agagcgtgga 301 cggttggctg gggcgtcgct ggagcgacat cgccggcgcc gaaggcggcg acaaggttcg 361 ccgcatggtc gaagacgccc gccgcagcgg catctcggct ttccgccaga tcaatcagcc 421 tttcccgagc ggcgtcgaaa tcccgatcga attcaccacg atgctgctgg gcgaccgcac 481 cggcatgatc gcggtcggca agaacatgca ggcggtcacc gagctgcatt cccggctgat 541 cgctgcgcag caggcgatgg agcgcgacta ttggcggttg cgtgaattgg agactcgcta 601 ccgcctggtg ttcgacgctg ccgccgatgc ggtgatgatc gtctccgccg gcgacatgcg 661 catcgtcgaa gccaaccggg cggcggtgaa tgcgatcagc cgcgtcgagc gcggcaatga 721 cgaccttgcg gggcgtgatt tcctcgccga agtggcggct gccgatcgcg atgcggtgcg 781 cgacatgctg gcccaggtgc gtcagcgcgg caccgcactc agcgtcctcg ttcatctcgg 841 ccgttacgac cgcgcctgga tgctgcgcgg ttcgctgatg tcgtccgagc gtcgtcaggt 901 tttcctgctg cacttcaccc cggtgaccac gactcccgcg atcgacgacg tcgacgatga 961 tgccgtgctg cgcgggctga tcgatcgcat tcccgacggg ttcgtcgcac tggattcgga 1021 aggcgtcgtt cgtcacgcca accaggcgtt tctcgatctg gtccagatcg gctccaagcc 1081 tgcggcggtc ggacgatcgc tgggcgtctg gatgggtcgt ccgggcgccg atctgtccag 1141 cttgctgacg ctgctgcggc gctacaagac ggtgcggctg ttccaaacga cgatccgcgg 1201 cgagctcggc accgagactg aagtcgaggt ctcggccgtc gacggcgagg acgaccaata 1261 catcggcgtt ctgatgcgca atgtcgcgcg acgcctcgac gctgcggacg accacgatgc 1321 cttgcgtcag gcgctcggcc cgatcagcaa gcagctcggg cgatcctcgc tgcgcaagct 1381 ggtgaagaac gccgtgagca ttgtcgagca gcactacgtg aaggaagcgc tgttgcgatc 1441 caagggcaat cgcacggcaa ctgccgaact gctcggattg agccggcaga gcctttatgc 1501 aaaactcaac tcctacggct tcgacgacaa aggtgtcgtt gcttctgctg ccgacggtgc 1561 agagggcgcc tcagacgacg cagaggataa gcttagtgct ggtggtagtg ctggtggtag 1621 tgctggtggt agtgctggtg gtagtgctgg tggaccggtc gccaccatgg tgagcaaggg 1681 cgaggagctg ttcaccgggg tggtgcccat cctggtcgag ctggacggcg acgtaaacgg 1741 ccacaagttc agcgtgtccg gcgagggcga gggcgatgcc acctacggca agctgaccct 1801 gaagctgatc tgcaccaccg gcaagctgcc cgtgccctgg cccaccctcg tgaccaccct 1861 gggctacggc ctgcagtgct tcgcccgcta ccccgaccac atgaagcagc acgacttctt 1921 caagtccgcc atgcccgaag gctacgtcca ggagcgcacc atcttcttca aggacgacgg 1981 caactacaag acccgcgccg aggtgaagtt cgagggcgac accctggtga accgcatcga 2041 gctgaagggc atcgacttca aggaggacgg caacatcctg gggcacaagc tggagtacaa 2101 ctacaacagc cacaacgtct atatcaccgc cgacaagcag aagaacggca tcaaggccaa 2161 cttcaagatc cgccacaaca tcgaggacgg cggcgtgcag ctcgccgacc actaccagca 2221 gaacaccccc atcggcgacg gccccgtgct gctgcccgac aaccactacc taagctacca 2281 gtccaagctg agcaaagacc ccaacgagaa gcgcgatcac atggtcctgc tggaacgcgt 2341 gaccgccgcc gggatcactc tcggcatgga cgagctgtac aaggctagcg gtaaaaagaa 2401 gaaaaagaag tcaaagacaa agtgtgtaat tatgtaagcg gccgcttcga gcagacatga 2461 taagatacat tgatgagttt ggacaaacca caactagaat gcagtgaaaa aaatgcttta 2521 tttgtgaaat ttgtgatgct attgctttat ttgtaaccat tataagctgc aataaacaag 2581 ttaacaacaa caattgcatt cattttatgt ttcaggttca gggggagatg tgggaggttt 2641 ttttaagcaa gtaaaacctc tacaaatgtg gtaaaatcga attctaatgg atcctctttg 2701 cgcttgcgtt ttcccttgtc cagatagccc agtagctgac attcatccgg ggtcagcacc 2761 gtttctgcgg actggctttc tacgtgttcc gcttccttta gcagcccttg cgccctgagt 2821 gcttgcggca gcgtgagctt caaaagaatt gccagctggg gcgccctctg gtaaggttgg 2881 gaagccctgc aaagtaaact ggatggcttt cttgccgcca aggatctgat ggcgcagggg 2941 atcaagatct gatcaagaga caggatgacg gtcgtttcgc atgcttgaac aagatggatt 3001 gcacgcaggt tctccggccg cttgggtgga gaggctattc ggctatgact gggcacaaca 3061 gacaatcggc tgctctgatg ccgccgtgtt ccggctgtca gcgcaggggc gcccggttct 3121 ttttgtcaag accgacctgt ccggtgccct gaatgaactg caggacgagg cagcgcggct 3181 atcgtggctg gccacgacgg gcgttccttg cgcagctgtg ctcgacgttg tcactgaagc 3241 gggaagggac tggctgctat tgggcgaagt gccggggcag gatctcctgt catctcacct 3301 tgctcctgcc gagaaagtat ccatcatggc tgatgcaatg cggcggctgc atacgcttga 3361 tccggctacc tgcccattcg accaccaagc gaaacatcgc atcgagcgag cacgcactcg 3421 gatggaagcc ggtcttgtcg atcaggatga tctggacgaa gagcatcagg ggctcgcgcc 3481 agccgaactg ttcgccaggc tcaaggcgcg tatgccggat ggtgaggatc tcgtcgtgac 3541 tcatggcgat gcctgcttgc cgaatatcat ggtggaaaat ggccgctttt ctggattcat 3601 cgactgtggc cggctgggtg tggcggaccg ctatcaggac atagcgttgg ctacccgtga 3661 tattgctgaa gagcttggcg gcgaatgggc tgaccgcttc ctcgtgcttt acggtatcgc 3721 cgctcccgat tcgcagcgca tcgccttcta tcgccttctt gacgagttct tctgagcggg 3781 actctggggt tcgaaatgac cgaccaagcg acgcccaacc ggtatcagct cactcaaagg 3841 cggtaatacg gttatccaca gaatcagggg ataacgcagg aaagaacatg tgagcaaaag 3901 gccagcaaaa ggccaggaac cgtaaaaagg ccgcgttgct ggcgtttttc cataggctcc 3961 gcccccctga cgagcatcac aaaaatcgac gctcaagtca gaggtggcga aacccgacag 4021 gactataaag ataccaggcg tttccccctg gaagctccct cgtgcgctct cctgttccga 4081 ccctgccgct taccggatac ctgtccgcct ttctcccttc gggaagcgtg gcgctttctc 4141 atagctcacg ctgtaggtat ctcagttcgg tgtaggtcgt tcgctccaag ctgggctgtg 4201 tgcacgaacc ccccgttcag cccgaccgct gcgccttatc cggtaactat cgtcttgagt 4261 ccaacccggt aagacacgac ttatcgccac tggcagcagc cactggtaac aggattagca 4321 gagcgaggta tgtaggcggt gctacagagt tcttgaagtg gtggcctaac tacggctaca 4381 ctagaaggac agtatttggt atctgcgctc tgctgaagcc agttaccttc ggaaaaagag 4441 ttggtagctc ttgatccggc aaacaaacca ccgctggtag cggtggtttt tttgtttgca 4501 agcagcagat tacgcgcaga aaaaaaggat ttcaagaaga tcctttgatc ttttctacgg 4561 ggtctgacgc tcagtggaac gaaaactcac gttaagggat tttggtcatg agattatcaa 4621 aaaggatctt cacctagatc cttttatagt ccggaaatac aggaacgcac gctggatggc 4681 ccttcgctgg gatggtgaaa ccatgaaaaa tggcagcttc agtggattaa gtgggggtaa 4741 tgtggcctgt accctctggt tgcataggta ttcatacggt taaaatttat caggcgcgat 4801 tgcggcagtt tttcgggtgg tttgttgcca tttttacctg tctgctgccg tgatcgcgct 4861 gaacgcgttt tagcggtgcg tacaattaag ggattatggt aaatccactt actgtctgcc 4921 ctcgtagcca tcgagataaa ccgcagtact ccggccacga tgcgtccggc gtagaggatc 4981 gagatct //
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