质粒名称: | pLH-sgRNA1-2XboxB |
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出品公司: | 爱迪基因 |
目录编号: | 75391 |
存储实验室: | Thoru Pederson |
载体骨架基本信息 |
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载体名称: | pLKO.1 |
载体抗性: | 氨苄青霉素 |
空载体大小: | 8000 bp |
完整质粒大小: | 8313 bp |
载体类型: | 哺乳动物表达,慢病毒,CRISPR |
筛选标记: | 潮霉素 |
高拷贝/低拷贝: | 高拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | sgRNA1-2XboxB |
物种来源: | Synthetic |
插入大小: | 106 bp |
启动子 | U6 |
克隆方法: | 限制性内切酶 |
5' 克隆位点: | Sbf I(未破坏) |
3' 克隆位点: | EcoR I(未破坏) |
5' 测序引物 | cccttcaccgagggcctatttccc |
3' 测序引物 | CTATTCTTTCCCCTGCACTGTACCC |
文献引用方法 |
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材料和方法部分: | pLH-sgRNA1-2XboxB was a gift from Thoru Pederson (Addgene plasmid # 75391 ; http://n2t.net/addgene:75391 ; RRID:Addgene_75391) |
参考文献部分: | Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T. Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. 10.1038/nbt.3526 PubMed 27088723 |
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载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS pLH-sgRNA1-2XboxB 8297 bp ds-DNA circular SYN 02-MAY-2019 DEFINITION sgRNA1-2XboxB. ACCESSION . VERSION . KEYWORDS pLH-sgRNA1-2XboxB SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8297) AUTHORS Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T TITLE Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. JOURNAL Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. PUBMED 27088723 REFERENCE 2 (bases 1 to 8297) AUTHORS . TITLE Direct Submission JOURNAL Exported May 2, 2019 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..8297 /organism="synthetic DNA construct" /mol_type="other DNA" protein_bind 106..127 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." promoter 142..172 /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 180..196 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." primer_bind 185..207 /label=M13/pUC Reverse /note="In lacZ gene" primer_bind 204..220 /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind 204..220 /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind 239..259 /label=T3 /note="T3 promoter, forward primer" promoter 241..259 /label=T3 promoter /note="promoter for bacteriophage T3 RNA polymerase" promoter 287..513 /label=RSV promoter /note="Rous sarcoma virus enhancer/promoter" LTR 514..694 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" misc_feature 741..866 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" misc_feature 1359..1592 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." promoter 2119..2359 /label=U6 promoter /note="RNA polymerase III promoter for human U6 snRNA" primer_bind 2119..2139 /label=hU6-F /note="Human U6 promoter, forward primer" primer_bind 2290..2309 /label=LKO.1 5' /note="Human U6 promoter, forward primer" CDS 2708..3013 /codon_start=1 /gene="ccdB" /product="CcdB, a bacterial toxin that poisons DNA gyrase" /label=ccdB /note="Plasmids containing the ccdB gene cannot be propagated in standard E. coli strains." /translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI" primer_bind 2892..2911 /label=ccdB-fwd /note="ccdB gene, forward primer" misc_feature 3188..3305 /label=cPPT/CTS /note="central polypurine tract and central termination sequence of HIV-1" promoter 3354..3864 /label=hPGK promoter /note="human phosphoglycerate kinase 1 promoter" primer_bind 3783..3801 /label=hPGK-F /note="Human PGK promoter, forward primer" CDS 3954..4979 /codon_start=1 /gene="aph(4)-Ia" /product="aminoglycoside phosphotransferase from E. coli" /label=HygR /note="confers resistance to hygromycin" /translation="MKKPELTATSVEKFLIEKFDSVSDLMQLSEGEESRAFSFDVGGRG YVLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQDLP ETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQ TVMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF GDSQYEVANIFFWRPWLACMEQQTRYFERRHPELAGSPRLRAYMLRIGLDQLYQSLVDG NFDDAAWAQGRCDAIVRSGAGTVGRTQIARRSAAVWTDGCVEVLADSGNRRPSTRPRAK E" primer_bind complement(5003..5019) /label=KS primer /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5004..5020) /label=pBluescriptKS /note="For pBluescript vector" LTR 5102..5335 /label=3' LTR (Delta-U3) /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" polyA_signal 5407..5528 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(5444..5463) /label=SV40pA-R /note="SV40 polyA, reverse primer" primer_bind 5498..5517 /label=EBV-rev /note="SV40 polyA terminator, reverse primer" rep_origin 5568..5703 /label=SV40 ori /note="SV40 origin of replication" primer_bind 5630..5649 /label=SV40pro-F /note="SV40 promoter/origin, forward primer" primer_bind complement(5723..5742) /label=T7 /note="T7 promoter, forward primer" promoter complement(5724..5742) /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" primer_bind complement(5752..5769) /label=M13 Forward /note="In lacZ gene. Also called M13-F20 or M13 (-21) Forward" primer_bind complement(5752..5768) /label=M13 fwd /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5761..5783) /label=M13/pUC Forward /note="In lacZ gene" rep_origin 5910..6365 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(5997..6016) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 6207..6228 /label=F1ori-F /note="F1 origin, forward primer" promoter 6391..6495 /gene="bla" /label=AmpR promoter CDS 6496..7356 /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind complement(6714..6733) /label=Amp-R /note="Ampicillin resistance gene, reverse primer" rep_origin 7527..8115 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind 8016..8035 /label=pBR322ori-F /note="pBR322 origin, forward primer" primer_bind 8269..8286 /label=L4440 /note="L4440 vector, forward primer" ORIGIN 1 gcgcccaata cgcaaaccgc ctctccccgc gcgttggccg attcattaat gcagctggca 61 cgacaggttt cccgactgga aagcgggcag tgagcgcaac gcaattaatg tgagttagct 121 cactcattag gcaccccagg ctttacactt tatgcttccg gctcgtatgt tgtgtggaat 181 tgtgagcgga taacaatttc acacaggaaa cagctatgac catgattacg ccaagcgcgc 241 aattaaccct cactaaaggg aacaaaagct ggagctgcaa gcttaatgta gtcttatgca 301 atactcttgt agtcttgcaa catggtaacg atgagttagc aacatgcctt acaaggagag 361 aaaaagcacc gtgcatgccg attggtggaa gtaaggtggt acgatcgtgc cttattagga 421 aggcaacaga cgggtctgac atggattgga cgaaccactg aattgccgca ttgcagagat 481 attgtattta agtgcctagc tcgatacata aacgggtctc tctggttaga ccagatctga 541 gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct 601 tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact ctggtaacta gagatccctc 661 agaccctttt agtcagtgtg gaaaatctct agcagtggcg cccgaacagg gacttgaaag 721 cgaaagggaa accagaggag ctctctcgac gcaggactcg gcttgctgaa gcgcgcacgg 781 caagaggcga ggggcggcga ctggtgagta cgccaaaaat tttgactagc ggaggctaga 841 aggagagaga tgggtgcgag agcgtcagta ttaagcgggg gagaattaga tcgcgatggg 901 aaaaaattcg gttaaggcca gggggaaaga aaaaatataa attaaaacat atagtatggg 961 caagcaggga gctagaacga ttcgcagtta atcctggcct gttagaaaca tcagaaggct 1021 gtagacaaat actgggacag ctacaaccat cccttcagac aggatcagaa gaacttagat 1081 cattatataa tacagtagca accctctatt gtgtgcatca aaggatagag ataaaagaca 1141 ccaaggaagc tttagacaag atagaggaag agcaaaacaa aagtaagacc accgcacagc 1201 aagcggccgc tgatcttcag acctggagga ggagatatga gggacaattg gagaagtgaa 1261 ttatataaat ataaagtagt aaaaattgaa ccattaggag tagcacccac caaggcaaag 1321 agaagagtgg tgcagagaga aaaaagagca gtgggaatag gagctttgtt ccttgggttc 1381 ttgggagcag caggaagcac tatgggcgca gcgtcaatga cgctgacggt acaggccaga 1441 caattattgt ctggtatagt gcagcagcag aacaatttgc tgagggctat tgaggcgcaa 1501 cagcatctgt tgcaactcac agtctggggc atcaagcagc tccaggcaag aatcctggct 1561 gtggaaagat acctaaagga tcaacagctc ctggggattt ggggttgctc tggaaaactc 1621 atttgcacca ctgctgtgcc ttggaatgct agttggagta ataaatctct ggaacagatt 1681 tggaatcaca cgacctggat ggagtgggac agagaaatta acaattacac aagcttaata 1741 cactccttaa ttgaagaatc gcaaaaccag caagaaaaga atgaacaaga attattggaa 1801 ttagataaat gggcaagttt gtggaattgg tttaacataa caaattggct gtggtatata 1861 aaattattca taatgatagt aggaggcttg gtaggtttaa gaatagtttt tgctgtactt 1921 tctatagtga atagagttag gcagggatat tcaccattat cgtttcagac ccacctccca 1981 accccgaggg gacccgacag gcccgaagga atagaagaag aaggtggaga gagagacaga 2041 gacagatcca ttcgattagt gaacggatct cgacggtatc gatcacgaga ctagcctcga 2101 gcggccgccc ccttcaccga gggcctattt cccatgattc cttcatattt gcatatacga 2161 tacaaggctg ttagagagat aattggaatt aatttgactg taaacacaaa gatattagta 2221 caaaatacgt gacgtagaaa gtaataattt cttgggtagt ttgcagtttt aaaattatgt 2281 tttaaaatgg actatcatat gcttaccgta acttgaaagt atttcgattt cttggcttta 2341 tatatcttgt ggaaaggacg aaacaccggt gtcttcgagg cttactaaaa gccagataac 2401 agtatgcgta tttgcgcgct gatttttgcg gtataagaat atatactgat atgtataccc 2461 gaagtatgtc aaaaagaggt gtgctatgaa gcagcgtatt acagtgacag ttgacagcga 2521 cagctatcag ttgctcaagg catatatgat gtcaatatct ccggtctggt aagcacaacc 2581 atgcagaatg aagcccgtcg tctgcgtgcc gaacgctgga aagcggaaaa tcaggaaggg 2641 atggctgagg tcgcccggtt tattgaaatg aacggctctt ttgctgacga gaacagggac 2701 tggtgaaatg cagtttaagg tttacaccta taaaagagag agccgttatc gtctgtttgt 2761 ggatgtacag agtgatatta ttgacacgcc cgggcgacgg atggtgatcc ccctggccag 2821 tgcacgtctg ctgtcagata aagtctcccg tgaactttac ccggtggtgc atatcgggga 2881 tgaaagctgg cgcatgatga ccaccgatat ggccagtgtg ccggtctccg ttatcgggga 2941 agaagtggct gatctcagcc accgcgaaaa tgacatcaaa aacgccatta acctgatgtt 3001 ctggggaata taaaccctgc aggacgaaga cccgtttgag agctagggcc ctgaagaagg 3061 gccctagcaa gttcaaataa ggctagtccg ttatcaactt gggccctgaa gaagggccca 3121 agtggcaccg agtcggtgct ttttttgaat tctcgacctc gagacaaatg gcagtattca 3181 tccacaattt taaaagaaaa ggggggattg gggggtacag tgcaggggaa agaatagtag 3241 acataatagc aacagacata caaactaaag aattacaaaa acaaattaca aaaattcaaa 3301 attttcgggt ttattacagg gacagcagag atccactttg gccgcggctc gagggggttg 3361 gggttgcgcc ttttccaagg cagccctggg tttgcgcagg gacgcggctg ctctgggcgt 3421 ggttccggga aacgcagcgg cgccgaccct gggtctcgca cattcttcac gtccgttcgc 3481 agcgtcaccc ggatcttcgc cgctaccctt gtgggccccc cggcgacgct tcctgctccg 3541 cccctaagtc gggaaggttc cttgcggttc gcggcgtgcc ggacgtgaca aacggaagcc 3601 gcacgtctca ctagtaccct cgcagacgga cagcgccagg gagcaatggc agcgcgccga 3661 ccgcgatggg ctgtggccaa tagcggctgc tcagcagggc gcgccgagag cagcggccgg 3721 gaaggggcgg tgcgggaggc ggggtgtggg gcggtagtgt gggccctgtt cctgcccgcg 3781 cggtgttccg cattctgcaa gcctccggag cgcacgtcgg cagtcggctc cctcgttgac 3841 cgaatcaccg acctctctcc ccagggggat ccaccggatc aagcttgcca gctggggcgc 3901 cctctggtaa ggttgggaag ccctgcagat ctgatcccgg ggggcaatga gatatgaaaa 3961 agcctgaact caccgcgacg tctgtcgaga agtttctgat cgaaaagttc gacagcgtct 4021 ccgacctgat gcagctctcg gagggcgaag aatctcgtgc tttcagcttc gatgtaggag 4081 ggcgtggata tgtcctgcgg gtaaatagct gcgccgatgg tttctacaaa gatcgttatg 4141 tttatcggca ctttgcatcg gccgcgctcc cgattccgga agtgcttgac attggggaat 4201 ttagcgagag cctgacctat tgcatctccc gccgtgcaca gggtgtcacg ttgcaagatc 4261 tgcctgaaac cgaactgccc gctgttctgc agccggtcgc ggaggccatg gatgcgatcg 4321 ctgcggccga tcttagccag acgagcgggt tcggcccatt cggaccgcaa ggaatcggtc 4381 aatacactac atggcgtgat ttcatatgcg cgattgctga tccccatgtg tatcactggc 4441 aaactgtgat ggacgacacc gtcagtgcgt ccgtcgcgca ggctctcgat gagctgatgc 4501 tttgggccga ggactgcccc gaagtccggc acctcgtgca cgcggatttc ggctccaaca 4561 atgtcctgac ggacaatggc cgcataacag cggtcattga ctggagcgag gcgatgttcg 4621 gggattccca atacgaggtc gccaacatct tcttctggag gccgtggttg gcttgtatgg 4681 agcagcagac gcgctacttc gagcggaggc atccggagct tgcaggatcg ccgcggctcc 4741 gggcgtatat gctccgcatt ggtcttgacc aactctatca gagcttggtt gacggcaatt 4801 tcgatgatgc agcttgggcg cagggtcgat gcgacgcaat cgtccgatcc ggagccggga 4861 ctgtcgggcg tacacaaatc gcccgcagaa gcgcggccgt ctggaccgat ggctgtgtag 4921 aagtactcgc cgatagtgga aaccgacgcc ccagcactcg tccgagggca aaggaataga 4981 gtagatgccg accgggatct atcgataccg tcgacctcga gggggggccc ggtaccttta 5041 agaccaatga cttacaaggc agctgtagat cttagccact ttttaaaaga aaagggggga 5101 ctggaagggc taattcactc ccaacgaaga aaagatctgc tttttgcttg tactgggtct 5161 ctctggttag accagatctg agcctgggag ctctctggct aactagggaa cccactgctt 5221 aagcctcaat aaagcttgcc ttgagtgctt caagtagtgt gtgcccgtct gttgtgtgac 5281 tctggtaact agagatccct cagacccttt tagtcagtgt ggaaaatctc tagcagtagt 5341 agttcatgtc atcttattat tcagtattta taacttgcaa agaaatgaat atcagagagt 5401 gagaggaact tgtttattgc agcttataat ggttacaaat aaagcaatag catcacaaat 5461 ttcacaaata aagcattttt ttcactgcat tctagttgtg gtttgtccaa actcatcaat 5521 gtatcttatc atgtctggct ctagctatcc cgcccctaac tccgcccatc ccgcccctaa 5581 ctccgcccag ttccgcccat tctccgcccc atggctgact aatttttttt atttatgcag 5641 aggccgaggc cgcctcggcc tctgagctat tccagaagta gtgaggaggc ttttttggag 5701 gcctagggac gtacccaatt cgccctatag tgagtcgtat tacgcgcgct cactggccgt 5761 cgttttacaa cgtcgtgact gggaaaaccc tggcgttacc caacttaatc gccttgcagc 5821 acatccccct ttcgccagct ggcgtaatag cgaagaggcc cgcaccgatc gcccttccca 5881 acagttgcgc agcctgaatg gcgaatggga cgcgccctgt agcggcgcat taagcgcggc 5941 gggtgtggtg gttacgcgca gcgtgaccgc tacacttgcc agcgccctag cgcccgctcc 6001 tttcgctttc ttcccttcct ttctcgccac gttcgccggc tttccccgtc aagctctaaa 6061 tcgggggctc cctttagggt tccgatttag tgctttacgg cacctcgacc ccaaaaaact 6121 tgattagggt gatggttcac gtagtgggcc atcgccctga tagacggttt ttcgcccttt 6181 gacgttggag tccacgttct ttaatagtgg actcttgttc caaactggaa caacactcaa 6241 ccctatctcg gtctattctt ttgatttata agggattttg ccgatttcgg cctattggtt 6301 aaaaaatgag ctgatttaac aaaaatttaa cgcgaatttt aacaaaatat taacgcttac 6361 aatttaggtg gcacttttcg gggaaatgtg cgcggaaccc ctatttgttt atttttctaa 6421 atacattcaa atatgtatcc gctcatgaga caataaccct gataaatgct tcaataatat 6481 tgaaaaagga agagtatgag tattcaacat ttccgtgtcg cccttattcc cttttttgcg 6541 gcattttgcc ttcctgtttt tgctcaccca gaaacgctgg tgaaagtaaa agatgctgaa 6601 gatcagttgg gtgcacgagt gggttacatc gaactggatc tcaacagcgg taagatcctt 6661 gagagttttc gccccgaaga acgttttcca atgatgagca cttttaaagt tctgctatgt 6721 ggcgcggtat tatcccgtat tgacgccggg caagagcaac tcggtcgccg catacactat 6781 tctcagaatg acttggttga gtactcacca gtcacagaaa agcatcttac ggatggcatg 6841 acagtaagag aattatgcag tgctgccata accatgagtg ataacactgc ggccaactta 6901 cttctgacaa cgatcggagg accgaaggag ctaaccgctt ttttgcacaa catgggggat 6961 catgtaactc gccttgatcg ttgggaaccg gagctgaatg aagccatacc aaacgacgag 7021 cgtgacacca cgatgcctgt agcaatggca acaacgttgc gcaaactatt aactggcgaa 7081 ctacttactc tagcttcccg gcaacaatta atagactgga tggaggcgga taaagttgca 7141 ggaccacttc tgcgctcggc ccttccggct ggctggttta ttgctgataa atctggagcc 7201 ggtgagcgtg ggtctcgcgg tatcattgca gcactggggc cagatggtaa gccctcccgt 7261 atcgtagtta tctacacgac ggggagtcag gcaactatgg atgaacgaaa tagacagatc 7321 gctgagatag gtgcctcact gattaagcat tggtaactgt cagaccaagt ttactcatat 7381 atactttaga ttgatttaaa acttcatttt taatttaaaa ggatctaggt gaagatcctt 7441 tttgataatc tcatgaccaa aatcccttaa cgtgagtttt cgttccactg agcgtcagac 7501 cccgtagaaa agatcaaagg atcttcttga gatccttttt ttctgcgcgt aatctgctgc 7561 ttgcaaacaa aaaaaccacc gctaccagcg gtggtttgtt tgccggatca agagctacca 7621 actctttttc cgaaggtaac tggcttcagc agagcgcaga taccaaatac tgttcttcta 7681 gtgtagccgt agttaggcca ccacttcaag aactctgtag caccgcctac atacctcgct 7741 ctgctaatcc tgttaccagt ggctgctgcc agtggcgata agtcgtgtct taccgggttg 7801 gactcaagac gatagttacc ggataaggcg cagcggtcgg gctgaacggg gggttcgtgc 7861 acacagccca gcttggagcg aacgacctac accgaactga gatacctaca gcgtgagcta 7921 tgagaaagcg ccacgcttcc cgaagggaga aaggcggaca ggtatccggt aagcggcagg 7981 gtcggaacag gagagcgcac gagggagctt ccagggggaa acgcctggta tctttatagt 8041 cctgtcgggt ttcgccacct ctgacttgag cgtcgatttt tgtgatgctc gtcagggggg 8101 cggagcctat ggaaaaacgc cagcaacgcg gcctttttac ggttcctggc cttttgctgg 8161 ccttttgctc acatgttctt tcctgcgtta tcccctgatt ctgtggataa ccgtattacc 8221 gcctttgagt gagctgatac cgctcgccgc agccgaacga ccgagcgcag cgagtcagtg 8281 agcgaggaag cggaaga //