质粒名称: | pXPR_050 |
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出品公司: | Addgene |
目录编号: | 96925 |
存储实验室: | John Doench, David Root |
载体骨架基本信息 |
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载体名称: | pXPR |
载体出品公司: | -- |
空载体大小: | -- |
完整质粒大小: | 8343 bp |
载体修饰: | -- |
载体类型: | 哺乳动物表达,慢病毒 |
筛选标记: | 嘌呤霉素 |
载体抗性: | 氨苄青霉素,100μg/mL |
生长温度: | 37 ℃ |
宿主菌: | NEB Stable |
拷贝数: | -- |
插入基因信息 |
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插入基因名称: | -- |
物种来源: | -- |
插入大小: | -- |
基因突变: | -- |
GenBank编号 | -- |
启动子: | -- |
标签/融合蛋白: | -- |
克隆方法: | -- |
5’克隆位点: | -- |
3’克隆位点: | -- |
5’测序引物 | -- |
3’测序引物 | -- |
文献引用方法 |
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材料和方法部分: | pXPR_050 was a gift from John Doench & David Root (Addgene plasmid # 96925 ; http://n2t.net/addgene:96925 ; RRID:Addgene_96925) |
参考文献部分: | Optimized libraries for CRISPR-Cas9 genetic screens with multiple modalities. Sanson KR, Hanna RE, Hegde M, Donovan KF, Strand C, Sullender ME, Vaimberg EW, Goodale A, Root DE, Piccioni F, Doench JG. Nat Commun. 2018 Dec 21;9(1):5416. doi: 10.1038/s41467-018-07901-8. 10.1038/s41467-018-07901-8 PubMed 30575746 |
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载体基本信息
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载体序列
LOCUS pXPR_050 8343 bp ds-DNA circular SYN 15-JUN-2022 DEFINITION lentiviral expression of gRNA scaffold. ACCESSION . VERSION . KEYWORDS pXPR_050 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8343) AUTHORS Sanson KR, Hanna RE, Hegde M, Donovan KF, Strand C, Sullender ME, Vaimberg EW, Goodale A, Root DE, Piccioni F, Doench JG TITLE Optimized libraries for CRISPR-Cas9 genetic screens with multiple modalities. JOURNAL Nat Commun. 2018 Dec 21;9(1):5416. doi: 10.1038/s41467-018-07901-8. PUBMED 30575746 REFERENCE 2 (bases 1 to 8343) AUTHORS . TITLE Direct Submission JOURNAL Exported Jun 15, 2022 from SnapGene Server 1.1.58 http://www.biofeng.com FEATURES Location/Qualifiers source 1..8343 /organism="synthetic DNA construct" /mol_type="other DNA" primer_bind complement(12..31) /label=SV40pro-F /note="SV40 promoter/origin, forward primer" polyA_signal 133..254 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(144..163) /label=EBV-rev /note="SV40 polyA terminator, reverse primer" primer_bind 198..217 /label=SV40pA-R /note="SV40 polyA, reverse primer" LTR 332..565 /label=3' LTR (Delta-U3) /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" misc_feature 637..1225 /label=WPRE /note="woodchuck hepatitis virus posttranscriptional regulatory element" CDS 743..754 /codon_start=1 /product="Factor Xa recognition and cleavage site" /label=Factor Xa site /translation="IEGR" primer_bind 1152..1172 /label=WPRE-R /note="WPRE, reverse primer" CDS complement(1241..1840) /codon_start=1 /gene="pac from Streptomyces alboniger" /product="puromycin N-acetyltransferase" /label=PuroR /note="confers resistance to puromycin" /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA" primer_bind complement(1324..1344) /label=Puro-F /note="Puromycin resistance gene, forward primer" primer_bind 1821..1840 /label=Puro-R /note="Puromycin resistance gene, reverse primer. Also called puro-variant-R" promoter complement(1853..3031) /label=EF-1-alpha promoter /note="strong constitutive promoter for human elongation factor EF-1-alpha" intron 1862..2800 /label=EF-1-alpha intron A /note="intron upstream of the start codon of human EF-1-alpha" primer_bind complement(1885..1905) /label=EF1a-F /note="Human elongation factor-1a promoter, forward primer" misc_feature 3169..3286 /label=cPPT/CTS /note="central polypurine tract and central termination sequence of HIV-1" promoter complement(3468..3708) /label=U6 promoter /note="RNA polymerase III promoter for human U6 snRNA" primer_bind complement(3518..3537) /label=LKO.1 5' /note="Human U6 promoter, forward primer" primer_bind complement(3688..3708) /label=hU6-F /note="Human U6 promoter, forward primer" CDS complement(3886..3930) /codon_start=1 /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /label=gp41 peptide /note="recognized by the 2H10 single-chain llama nanobody" /translation="KNEQELLELDKWASL" misc_feature 4115..4348 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." misc_feature 4841..4966 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" LTR 5013..5193 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" promoter complement(5194..5420) /label=RSV promoter /note="Rous sarcoma virus enhancer/promoter" primer_bind complement(5448..5468) /label=T3 /note="T3 promoter, forward primer" promoter complement(5448..5466) /label=T3 promoter /note="promoter for bacteriophage T3 RNA polymerase" primer_bind complement(5487..5503) /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5487..5503) /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind complement(5500..5522) /label=M13/pUC Reverse /note="In lacZ gene" protein_bind 5511..5527 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." promoter complement(5535..5565) /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 5580..5601 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." primer_bind complement(5718..5735) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(5889..6477) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(5969..5988) /label=pBR322ori-F /note="pBR322 origin, forward primer" CDS complement(6648..7508) /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind 7271..7290 /label=Amp-R /note="Ampicillin resistance gene, reverse primer" promoter complement(7509..7613) /gene="bla" /label=AmpR promoter rep_origin complement(7639..8094) /direction=LEFT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(7776..7797) /label=F1ori-F /note="F1 origin, forward primer" primer_bind 7988..8007 /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 8221..8243 /label=M13/pUC Forward /note="In lacZ gene" primer_bind 8235..8252 /label=M13 Forward /note="In lacZ gene. Also called M13-F20 or M13 (-21) Forward" primer_bind 8236..8252 /label=M13 fwd /note="common sequencing primer, one of multiple similar variants" primer_bind 8262..8281 /label=T7 /note="T7 promoter, forward primer" promoter 8262..8280 /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" rep_origin 8301..93 /label=SV40 ori /note="SV40 origin of replication" ORIGIN 1 ggccgaggcg gcctcggcct ctgcataaat aaaaaaaatt agtcagccat ggggcggaga 61 atgggcggaa ctgggcggag ttaggggcgg gatgggcgga gttaggggcg ggatagctag 121 agccagacat gataagatac attgatgagt ttggacaaac cacaactaga atgcagtgaa 181 aaaaatgctt tatttgtgaa atttgtgatg ctattgcttt atttgtaacc attataagct 241 gcaataaaca agttcctctc actctctgat attcatttct ttgcaagtta taaatactga 301 ataataagat gacatgaact actatacgta ctgctagaga ttttccacac tgactaaaag 361 ggtctgaggg atctctagtt accagagtca cacaacagac gggcacacac tacttgaagc 421 actcaaggca agctttattg aggcttaagc agtgggttcc ctagttagcc agagagctcc 481 caggctcaga tctggtctaa ccagagagac ccagtacaag caaaaagcag atcttgtctt 541 cgttgggagt gaattagccc ttccagtccc cccttttctt ttaaaaagtg gctaagatct 601 acagctgcct tgtaagtcat tggtcttaaa gtcgacgcgg ggaggcggcc caaagggaga 661 tccgactcgt ctgagggcga aggcgaagac gcggaagagg ccgcagagcc ggcagcaggc 721 cgcgggaagg aaggtccgct ggattgaggg ccgaagggac gtagcagaag gacgtcccgc 781 gcagaatcca ggtggcaaca caggcgagca gccaaggaaa ggacgatgat ttccccgaca 841 acaccacgga attgtcagtg cccaacagcc gagcccctgt ccagcagcgg gcaaggcagg 901 cggcgatgag ttccgccgtg gcaataggga gggggaaagc gaaagtcccg gaaaggagct 961 gacaggtggt ggcaatgccc caaccagtgg gggttgcgtc agcaaacaca gtgcacacca 1021 cgccacgttg cctgacaacg ggccacaact cctcataaag agacagcaac caggatttat 1081 acaaggagga gaaaatgaaa gccatacggg aagcaatagc atgatacaaa ggcattaaag 1141 cagcgtatcc acatagcgta aaaggagcaa catagttaag aataccagtc aatctttcac 1201 aaattttgta atccagaggt tgattgtcga cttaacgcgt tcaggcaccg ggcttgcggg 1261 tcatgcacca ggtgcgcggt ccttcgggca cctcgacgtc ggcggtgacg gtgaagccga 1321 gccgctcgta gaaggggagg ttgcggggcg cggaggtctc caggaaggcg ggcaccccgg 1381 cgcgctcggc cgcctccact ccggggagca cgacggcgct gcccagaccc ttgccctggt 1441 ggtcgggcga gactccgacg gtggccagga accacgcggg ctccttgggc cggtgcggcg 1501 ccaggaggcc ttccatctgt tgctgcgcgg ccagccggga accgctcaac tcggccatgc 1561 gcgggccgat ctcggcgaac accgcccccg cttcgacgct ctccggcgtg gtccagaccg 1621 ccacggcggc gccgtcgtcc gcgacccaca ccttgccgat gtcgagcccg acgcgcgtga 1681 ggaagagttc ttgcagctcg gtgacccgct cgatgtggcg gtccggatcg acggtgtggc 1741 gcgtggcggg gtagtcggcg aacgcggcgg cgagggtgcg tacggccctg gggacgtcgt 1801 cgcgggtggc gaggcgcacc gtgggcttgt actcggtcat ggtggccgta cgtcacgaca 1861 cctgaaatgg aagaaaaaaa ctttgaacca ctgtctgagg cttgagaatg aaccaagatc 1921 caaactcaaa aagggcaaat tccaaggaga attacatcaa gtgccaagct ggcctaactt 1981 cagtctccac ccactcagtg tggggaaact ccatcgcata aaacccctcc ccccaaccta 2041 aagacgacgt actccaaaag ctcgagaact aatcgaggtg cctggacggc gcccggtact 2101 ccgtggagtc acatgaagcg acggctgagg acggaaaggc ccttttcctt tgtgtgggtg 2161 actcacccgc ccgctctccc gagcgccgcg tcctccattt tgagctccct gcagcagggc 2221 cgggaagcgg ccatctttcc gctcacgcaa ctggtgccga ccgggccagc cttgccgccc 2281 agggcggggc gatacacggc ggcgcgaggc caggcaccag agcaggccgg ccagcttgag 2341 actacccccg tccgattctc ggtggccgcg ctcgcaggcc ccgcctcgcc gaacatgtgc 2401 gctgggacgc acgggccccg tcgccgcccg cggccccaaa aaccgaaata ccagtgtgca 2461 gatcttggcc cgcatttaca agactatctt gccagaaaaa aagcgtcgca gcaggtcatc 2521 aaaaatttta aatggctaga gacttatcga aagcagcgag acaggcgcga aggtgccacc 2581 agattcgcac gcggcggccc cagcgcccag gccaggcctc aactcaagca cgaggcgaag 2641 gggctcctta agcgcaaggc ctcgaactct cccacccact tccaacccga agctcgggat 2701 caagaatcac gtactgcagc caggtggaag taattcaagg cacgcaaggg ccataacccg 2761 taaagaggcc aggcccgcgg gaaccacaca cggcacttac ctgtgttctg gcggcaaacc 2821 cgttgcgaaa aagaacgttc acggcgacta ctgcacttat atacggttct cccccaccct 2881 cgggaaaaag gcggagccag tacacgacat cactttccca gtttaccccg cgccaccttc 2941 tctaggcacc ggatcaattg ccgacccctc cccccaactt ctcggggact gtgggcgatg 3001 tgcgctctgc ccactgacgg gcaccggagc caattcccac tcctttcaag acctagaagg 3061 tccattagct gcaaagattc ctctctgttt aaaactttat ccatctttgc acccgggccc 3121 cctgagccgg cgccaaagtg gatctctgct gtccctgtaa taaacccgaa aattttgaat 3181 ttttgtaatt tgtttttgta attctttagt ttgtatgtct gttgctatta tgtctactat 3241 tctttcccct gcactgtacc ccccaatccc cccttttctt ttaaaattgt ggatgaatac 3301 tgccatttgt ctcaagatct agttacgcca agcttgaatt caaaaaagca ccgactcggt 3361 gccacttttt caagttgata acggactagc cttatttcaa cttgctacag catttctgct 3421 gtagctctga aacagagacg caaaaaaccg gtcgtctccg gtgtttcgtc ctttccacaa 3481 gatatataaa gccaagaaat cgaaatactt tcaagttacg gtaagcatat gatagtccat 3541 tttaaaacat aattttaaaa ctgcaaacta cccaagaaat tattactttc tacgtcacgt 3601 attttgtact aatatctttg tgtttacagt caaattaatt ctaattatct ctctaacagc 3661 cttgtatcgt atatgcaaat atgaaggaat catgggaaat aggccctctc tgggtcccct 3721 cggggttggg aggtgggtct gaaacgataa tggtgaatat ccctgcctaa ctctattcac 3781 tatagaaagt acagcaaaaa ctattcttaa acctaccaag cctcctacta tcattatgaa 3841 taattttata taccacagcc aatttgttat gttaaaccaa ttccacaaac ttgcccattt 3901 atctaattcc aataattctt gttcattctt ttcttgctgg ttttgcgatt cttcaattaa 3961 ggagtgtatt aagcttgtgt aattgttaat ttctctgtcc cactccatcc aggtcgtgtg 4021 attccaaatc tgttccagag atttattact ccaactagca ttccaaggca cagcagtggt 4081 gcaaatgagt tttccagagc aaccccaaat ccccaggagc tgttgatcct ttaggtatct 4141 ttccacagcc aggattcttg cctggagctg cttgatgccc cagactgtga gttgcaacag 4201 atgctgttgc gcctcaatag ccctcagcaa attgttctgc tgctgcacta taccagacaa 4261 taattgtctg gcctgtaccg tcagcgtcat tgacgctgcg cccatagtgc ttcctgctgc 4321 tcccaagaac ccaaggaaca aagctcctat tcccactgct cttttttctc tctgcaccac 4381 tcttctcttt gccttggtgg gtgctactcc taatggttca atttttacta ctttatattt 4441 atataattca cttctccaat tgtccctcat atctcctcct ccaggtctga agatcagcgg 4501 ccgcttgctg tgcggtggtc ttacttttgt tttgctcttc ctctatcttg tctaaagctt 4561 ccttggtgtc ttttatctct atcctttgat gcacacaata gagggttgct actgtattat 4621 ataatgatct aagttcttct gatcctgtct gaagggatgg ttgtagctgt cccagtattt 4681 gtctacagcc ttctgatgtt tctaacaggc caggattaac tgcgaatcgt tctagctccc 4741 tgcttgccca tactatatgt tttaatttat attttttctt tccccctggc cttaaccgaa 4801 ttttttccca tcgcgatcta attctccccc gcttaatact gacgctctcg cacccatctc 4861 tctccttcta gcctccgcta gtcaaaattt ttggcgtact caccagtcgc cgcccctcgc 4921 ctcttgccgt gcgcgcttca gcaagccgag tcctgcgtcg agagagctcc tctggtttcc 4981 ctttcgcttt caagtccctg ttcgggcgcc actgctagag attttccaca ctgactaaaa 5041 gggtctgagg gatctctagt taccagagtc acacaacaga cgggcacaca ctacttgaag 5101 cactcaaggc aagctttatt gaggcttaag cagtgggttc cctagttagc cagagagctc 5161 ccaggctcag atctggtcta accagagaga cccgtttatg tatcgagcta ggcacttaaa 5221 tacaatatct ctgcaatgcg gcaattcagt ggttcgtcca atccatgtca gacccgtctg 5281 ttgccttcct aataaggcac gatcgtacca ccttacttcc accaatcggc atgcacggtg 5341 ctttttctct ccttgtaagg catgttgcta actcatcgtt accatgttgc aagactacaa 5401 gagtattgca taagactaca ttaagcttgc agctccagct tttgttccct ttagtgaggg 5461 ttaattgcgc gcttggcgta atcatggtca tagctgtttc ctgtgtgaaa ttgttatccg 5521 ctcacaattc cacacaacat acgagccgga agcataaagt gtaaagcctg gggtgcctaa 5581 tgagtgagct aactcacatt aattgcgttg cgctcactgc ccgctttcca gtcgggaaac 5641 ctgtcgtgcc agctgcatta atgaatcggc caacgcgcgg ggagaggcgg tttgcgtatt 5701 gggcgctctt ccgcttcctc gctcactgac tcgctgcgct cggtcgttcg gctgcggcga 5761 gcggtatcag ctcactcaaa ggcggtaata cggttatcca cagaatcagg ggataacgca 5821 ggaaagaaca tgtgagcaaa aggccagcaa aaggccagga accgtaaaaa ggccgcgttg 5881 ctggcgtttt tccataggct ccgcccccct gacgagcatc acaaaaatcg acgctcaagt 5941 cagaggtggc gaaacccgac aggactataa agataccagg cgtttccccc tggaagctcc 6001 ctcgtgcgct ctcctgttcc gaccctgccg cttaccggat acctgtccgc ctttctccct 6061 tcgggaagcg tggcgctttc tcatagctca cgctgtaggt atctcagttc ggtgtaggtc 6121 gttcgctcca agctgggctg tgtgcacgaa ccccccgttc agcccgaccg ctgcgcctta 6181 tccggtaact atcgtcttga gtccaacccg gtaagacacg acttatcgcc actggcagca 6241 gccactggta acaggattag cagagcgagg tatgtaggcg gtgctacaga gttcttgaag 6301 tggtggccta actacggcta cactagaaga acagtatttg gtatctgcgc tctgctgaag 6361 ccagttacct tcggaaaaag agttggtagc tcttgatccg gcaaacaaac caccgctggt 6421 agcggtggtt tttttgtttg caagcagcag attacgcgca gaaaaaaagg atctcaagaa 6481 gatcctttga tcttttctac ggggtctgac gctcagtgga acgaaaactc acgttaaggg 6541 attttggtca tgagattatc aaaaaggatc ttcacctaga tccttttaaa ttaaaaatga 6601 agttttaaat caatctaaag tatatatgag taaacttggt ctgacagtta ccaatgctta 6661 atcagtgagg cacctatctc agcgatctgt ctatttcgtt catccatagt tgcctgactc 6721 cccgtcgtgt agataactac gatacgggag ggcttaccat ctggccccag tgctgcaatg 6781 ataccgcgag acccacgctc accggctcca gatttatcag caataaacca gccagccgga 6841 agggccgagc gcagaagtgg tcctgcaact ttatccgcct ccatccagtc tattaattgt 6901 tgccgggaag ctagagtaag tagttcgcca gttaatagtt tgcgcaacgt tgttgccatt 6961 gctacaggca tcgtggtgtc acgctcgtcg tttggtatgg cttcattcag ctccggttcc 7021 caacgatcaa ggcgagttac atgatccccc atgttgtgca aaaaagcggt tagctccttc 7081 ggtcctccga tcgttgtcag aagtaagttg gccgcagtgt tatcactcat ggttatggca 7141 gcactgcata attctcttac tgtcatgcca tccgtaagat gcttttctgt gactggtgag 7201 tactcaacca agtcattctg agaatagtgt atgcggcgac cgagttgctc ttgcccggcg 7261 tcaatacggg ataataccgc gccacatagc agaactttaa aagtgctcat cattggaaaa 7321 cgttcttcgg ggcgaaaact ctcaaggatc ttaccgctgt tgagatccag ttcgatgtaa 7381 cccactcgtg cacccaactg atcttcagca tcttttactt tcaccagcgt ttctgggtga 7441 gcaaaaacag gaaggcaaaa tgccgcaaaa aagggaataa gggcgacacg gaaatgttga 7501 atactcatac tcttcctttt tcaatattat tgaagcattt atcagggtta ttgtctcatg 7561 agcggataca tatttgaatg tatttagaaa aataaacaaa taggggttcc gcgcacattt 7621 ccccgaaaag tgccacctaa attgtaagcg ttaatatttt gttaaaattc gcgttaaatt 7681 tttgttaaat cagctcattt tttaaccaat aggccgaaat cggcaaaatc ccttataaat 7741 caaaagaata gaccgagata gggttgagtg ttgttccagt ttggaacaag agtccactat 7801 taaagaacgt ggactccaac gtcaaagggc gaaaaaccgt ctatcagggc gatggcccac 7861 tacgtgaacc atcaccctaa tcaagttttt tggggtcgag gtgccgtaaa gcactaaatc 7921 ggaaccctaa agggagcccc cgatttagag cttgacgggg aaagccggcg aacgtggcga 7981 gaaaggaagg gaagaaagcg aaaggagcgg gcgctagggc gctggcaagt gtagcggtca 8041 cgctgcgcgt aaccaccaca cccgccgcgc ttaatgcgcc gctacagggc gcgtcccatt 8101 cgccattcag gctgcgcaac tgttgggaag ggcgatcggt gcgggcctct tcgctattac 8161 gccagctggc gaaaggggga tgtgctgcaa ggcgattaag ttgggtaacg ccagggtttt 8221 cccagtcacg acgttgtaaa acgacggcca gtgagcgcgc gtaatacgac tcactatagg 8281 gcgaattggg tacgtcccta ggcctccaaa aaagcctcct cactacttct ggaatagctc 8341 aga //
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