质粒名称: | HBT-pcoCas9,pHBT-pcoCas9-FLAG-NLS |
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出品公司: | 爱迪基因 |
目录编号: | 52254 |
存储实验室: | Jen Sheen |
载体骨架基本信息 |
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载体名称: | HBT-FLAG |
载体抗性: | 氨苄青霉素 |
载体类型: | CRISPR,植物表达 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | pcoCas9,plant codon–optimized Cas9 |
物种来源: | Synthetic |
GenBank编号 | KF264451 |
启动子 | hybrid constitutive promoter 35SPPDK |
标签/融合蛋白: |
FLAG(插入N端子)
NLS(插入件上的N端子)
NLS(插接件上的C端子)
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克隆方法: | 限制性内切酶 |
5' 克隆位点: | BamHI(未破坏) |
3' 克隆位点: | PstI (未破坏) |
5' 测序引物 | sequencing from the promoter: 5’ gtcacgtagtaagcagctctcgg 3’ |
3' 测序引物 | sequencing from the terminator: 5’ atcgcaagaccggcaacagga 3’ |
文献引用方法 |
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材料和方法部分: | HBT-pcoCas9 was a gift from Jen Sheen (Addgene plasmid # 52254 ; http://n2t.net/addgene:52254 ; RRID:Addgene_52254) |
参考文献部分: | Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Li JF, Norville JE, Aach J, McCormack M, Zhang D, Bush J, Church GM, Sheen J. Nat Biotechnol. 2013 Aug;31(8):688-91. doi: 10.1038/nbt.2654. 10.1038/nbt.2654 PubMed 23929339 |
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HBTpcoCas9载体基本信息
HBTpcoCas9载体图谱质粒图谱和多克隆位点信息
HBTpcoCas9载体简介
HBTpcoCas9载体序列
LOCUS HBT-pcoCas9 7940 bp ds-DNA circular SYN 20-SEP-2018 DEFINITION transient expression of pcoCas9 gene in plant cells. ACCESSION . VERSION . KEYWORDS HBT-pcoCas9 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 7940) AUTHORS Li JF, Norville JE, Aach J, McCormack M, Zhang D, Bush J, Church GM, Sheen J TITLE Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. JOURNAL Nat Biotechnol. 2013 Aug;31(8):688-91. doi: 10.1038/nbt.2654. PUBMED 23929339 REFERENCE 2 (bases 1 to 7940) AUTHORS . TITLE Direct Submission JOURNAL Exported Sep 20, 2018 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..7940 /organism="synthetic DNA construct" /mol_type="other DNA" primer_bind complement(39..55) /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind complement(39..55) /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind complement(52..74) /label=M13/pUC Reverse /note="In lacZ gene" protein_bind 63..79 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." promoter complement(87..117) /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 132..153 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." primer_bind complement(270..287) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(441..1029) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(521..540) /label=pBR322ori-F /note="pBR322 origin, forward primer" CDS complement(1200..2060) /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind 1823..1842 /label=Amp-R /note="Ampicillin resistance gene, reverse primer" promoter complement(2061..2165) /gene="bla" /label=AmpR promoter primer_bind 2233..2251 /label=pBRforEco /note="pBR322 vectors, upsteam of EcoRI site, forward primer" primer_bind complement(2289..2311) /label=pGEX 3' /note="pGEX vectors, reverse primer" primer_bind 2411..2430 /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" primer_bind 2624..2646 /label=M13/pUC Forward /note="In lacZ gene" primer_bind 2638..2655 /label=M13 Forward /note="In lacZ gene. Also called M13-F20 or M13 (-21) Forward" primer_bind 2639..2655 /label=M13 fwd /note="common sequencing primer, one of multiple similar variants" promoter 2722..3231 /label=35SPPDK promoter /note="hybrid promoter consisting of the cauliflower mosaic virus 35S enhancer fused to the maize C4PPDK basal promoter (Yoo et al., 2007)" CDS 3243..3290 /codon_start=1 /product="two tandem FLAG(R) epitope tags" /label=2xFLAG /translation="DYKDDDDKDYKDDDDK" CDS 3297..3317 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS join(3342..4778,4968..7631) /codon_start=1 /product="Cas9 endonuclease from the Streptococcus pyogenes Type II CRISPR/Cas system" /label=pcoCas9 /note="plant codon-optimized Cas9 gene containing the potato IV2 intron" /translation="DKKYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKN LIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESF LVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKF RGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLE NLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQI GDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSASMIKRYDEHHQDLTLLKALVRQ QLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLR KQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGN SRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYF TVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDS VEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERL KTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQ LIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRH KPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYL YYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPS EEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHV AQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLN AVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTE ITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKE SILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGIT IMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNEL ALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADA NLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLD ATLIHQSITGLYETRIDLSQLGGD" intron 4779..4967 /label=IV2 intron /note="modified second intron of the potato ST-LS1 gene (Vancanneyt et al., 1990)" CDS 7632..7679 /codon_start=1 /product="bipartite nuclear localization signal from nucleoplasmin" /label=nucleoplasmin NLS /translation="KRPAATKKAGQAKKKK" terminator 7688..7940 /label=NOS terminator /note="nopaline synthase terminator and poly(A) signal" ORIGIN 1 cgatgataag ctgtcaaaca tgagaattcg taatcatggt catagctgtt tcctgtgtga 61 aattgttatc cgctcacaat tccacacaac atacgagccg gaagcataaa gtgtaaagcc 121 tggggtgcct aatgagtgag ctaactcaca ttaattgcgt tgcgctcact gcccgctttc 181 cagtcgggaa acctgtcgtg ccagctgcat taatgaatcg gccaacgcgc ggggagaggc 241 ggtttgcgta ttgggcgctc ttccgcttcc tcgctcactg actcgctgcg ctcggtcgtt 301 cggctgcggc gagcggtatc agctcactca aaggcggtaa tacggttatc cacagaatca 361 ggggataacg caggaaagaa catgtgagca aaaggccagc aaaaggccag gaaccgtaaa 421 aaggccgcgt tgctggcgtt tttccatagg ctccgccccc ctgacgagca tcacaaaaat 481 cgacgctcaa gtcagaggtg gcgaaacccg acaggactat aaagatacca ggcgtttccc 541 cctggaagct ccctcgtgcg ctctcctgtt ccgaccctgc cgcttaccgg atacctgtcc 601 gcctttctcc cttcgggaag cgtggcgctt tctcatagct cacgctgtag gtatctcagt 661 tcggtgtagg tcgttcgctc caagctgggc tgtgtgcacg aaccccccgt tcagcccgac 721 cgctgcgcct tatccggtaa ctatcgtctt gagtccaacc cggtaagaca cgacttatcg 781 ccactggcag cagccactgg taacaggatt agcagagcga ggtatgtagg cggtgctaca 841 gagttcttga agtggtggcc taactacggc tacactagaa gaacagtatt tggtatctgc 901 gctctgctga agccagttac cttcggaaaa agagttggta gctcttgatc cggcaaacaa 961 accaccgctg gtagcggtgg tttttttgtt tgcaagcagc agattacgcg cagaaaaaaa 1021 ggatctcaag aagatccttt gatcttttct acggggtctg acgctcagtg gaacgaaaac 1081 tcacgttaag ggattttggt catgagatta tcaaaaagga tcttcaccta gatcctttta 1141 aattaaaaat gaagttttaa atcaatctaa agtatatatg agtaaacttg gtctgacagt 1201 taccaatgct taatcagtga ggcacctatc tcagcgatct gtctatttcg ttcatccata 1261 gttgcctgac tccccgtcgt gtagataact acgatacggg agggcttacc atctggcccc 1321 agtgctgcaa tgataccgcg agacccacgc tcaccggctc cagatttatc agcaataaac 1381 cagccagccg gaagggccga gcgcagaagt ggtcctgcaa ctttatccgc ctccatccag 1441 tctattaatt gttgccggga agctagagta agtagttcgc cagttaatag tttgcgcaac 1501 gttgttgcca ttgctacagg catcgtggtg tcacgctcgt cgtttggtat ggcttcattc 1561 agctccggtt cccaacgatc aaggcgagtt acatgatccc ccatgttgtg caaaaaagcg 1621 gttagctcct tcggtcctcc gatcgttgtc agaagtaagt tggccgcagt gttatcactc 1681 atggttatgg cagcactgca taattctctt actgtcatgc catccgtaag atgcttttct 1741 gtgactggtg agtactcaac caagtcattc tgagaatagt gtatgcggcg accgagttgc 1801 tcttgcccgg cgtcaatacg ggataatacc gcgccacata gcagaacttt aaaagtgctc 1861 atcattggaa aacgttcttc ggggcgaaaa ctctcaagga tcttaccgct gttgagatcc 1921 agttcgatgt aacccactcg tgcacccaac tgatcttcag catcttttac tttcaccagc 1981 gtttctgggt gagcaaaaac aggaaggcaa aatgccgcaa aaaagggaat aagggcgaca 2041 cggaaatgtt gaatactcat actcttcctt tttcaatatt attgaagcat ttatcagggt 2101 tattgtctca tgagcggata catatttgaa tgtatttaga aaaataaaca aataggggtt 2161 ccgcgcacat ttccccgaaa agtgccacct gacgtctaag aaaccattat tatcatgaca 2221 ttaacctata aaaataggcg tatcacgagg ccctttcgtc tcgcgcgttt cggtgatgac 2281 ggtgaaaacc tctgacacat gcagctcccg gagacggtca cagcttgtct gtaagcggat 2341 gccgggagca gacaagcccg tcagggcgcg tcagcgggtg ttggcgggtg tcggggctgg 2401 cttaactatg cggcatcaga gcagattgta ctgagagtgc accatatgcg gtgtgaaata 2461 ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc attcgccatt caggctgcgc 2521 aactgttggg aagggcgatc ggtgcgggcc tcttcgctat tacgccagct ggcgaaaggg 2581 ggatgtgctg caaggcgatt aagttgggta acgccagggt tttcccagtc acgacgttgt 2641 aaaacgacgg ccagtgccaa gctctcgaga agcttactcc aagaatatca aagatacagt 2701 ctcagaagac caaagggcta ttgagacttt tcaacaaagg gtaatatcgg gaaacctcct 2761 cggattccat tgcccagcta tctgtcactt catcaaaagg acagtagaaa aggaaggtgg 2821 cacctacaaa tgccatcatt gcgataaagg aaaggctatc gttcaagatg cctctgccga 2881 cagtggtccc aaagatggac ccccacccac aaggagcatc gtggaaaaag aagacgttcc 2941 aaccacgtct tcaaagcaag tggattgatg tgatatctcc actgacgtaa gggatgacgc 3001 acaatcccac tatccttcgc cccaagcttg ggcccaagct tgggtcgcgc cccacggatg 3061 gtataagaat aaaggcattc cgcgtgcagg attcacccgt tcgcctctca ccttttcgct 3121 gtactctctc gccacacaca ccccctctcc agctccgttg gagctccgga cagcagcagg 3181 cgcggggcgg tcacgtagta agcagctctc ggctccctct ccccttgctc cgtggatcca 3241 tggattacaa ggatgatgat gataaggatt acaaggatga tgatgataag atggctccaa 3301 agaagaagag aaaggttgga atccacggag ttccagctgc tgataagaag tactctatcg 3361 gacttgacat cggaaccaac tctgttggat gggctgttat caccgatgag tacaaggttc 3421 catctaagaa gttcaaggtt cttggaaaca ccgatagaca ctctatcaag aagaacctta 3481 tcggtgctct tcttttcgat tctggagaga ccgctgaggc taccagattg aagagaaccg 3541 ctagaagaag atacaccaga agaaagaaca gaatctgcta ccttcaggaa atcttctcta 3601 acgagatggc taaggttgat gattctttct tccacagact tgaggagtct ttccttgttg 3661 aggaggataa gaagcacgag agacacccaa tcttcggaaa catcgttgat gaggttgctt 3721 accacgagaa gtacccaacc atctaccacc ttagaaagaa gttggttgat tctaccgata 3781 aggctgatct tagacttatc taccttgctc ttgctcacat gatcaagttc agaggacact 3841 tccttatcga gggagacctt aacccagata actctgatgt tgataagttg ttcatccagc 3901 ttgttcagac ctacaaccag cttttcgagg agaacccaat caacgcttct ggagttgatg 3961 ctaaggctat cctttctgct agactttcta agtctcgtag acttgagaac cttatcgctc 4021 agcttccagg agagaagaag aacggacttt tcggaaacct tatcgctctt tctcttggac 4081 ttaccccaaa cttcaagtct aacttcgatc ttgctgagga tgctaagttg cagctttcta 4141 aggataccta cgatgatgat cttgataacc ttcttgctca gatcggagat cagtacgctg 4201 atcttttcct tgctgctaag aacctttctg atgctatcct tctttctgac atccttagag 4261 ttaacaccga gatcaccaag gctccacttt ctgcttctat gatcaagaga tacgatgagc 4321 accaccagga tcttaccctt ttgaaggctc ttgttagaca gcagcttcca gagaagtaca 4381 aggaaatctt cttcgatcag tctaagaacg gatacgctgg atacatcgat ggaggagctt 4441 ctcaggagga gttctacaag ttcatcaagc caatccttga gaagatggat ggaaccgagg 4501 agcttcttgt taagttgaac agagaggatc ttcttagaaa gcagagaacc ttcgataacg 4561 gatctatccc acaccagatc caccttggag agcttcacgc tatccttcgt agacaggagg 4621 atttctaccc attcttgaag gataacagag agaagatcga gaagatcctt accttcagaa 4681 tcccatacta cgttggacca cttgctagag gaaactctcg tttcgcttgg atgaccagaa 4741 agtctgagga gaccatcacc ccttggaact tcgaggaggt aagtttctgc ttctaccttt 4801 gatatatata taataattat cattaattag tagtaatata atatttcaaa tatttttttc 4861 aaaataaaag aatgtagtat atagcaattg cttttctgta gtttataagt gtgtatattt 4921 taatttataa cttttctaat atatgaccaa aatttgttga tgtgcaggtt gttgataagg 4981 gagcttctgc tcagtctttc atcgagagaa tgaccaactt cgataagaac cttccaaacg 5041 agaaggttct tccaaagcac tctcttcttt acgagtactt caccgtttac aacgagctta 5101 ccaaggttaa gtacgttacc gagggaatga gaaagccagc tttcctttct ggagagcaga 5161 agaaggctat cgttgatctt cttttcaaga ccaacagaaa ggttaccgtt aagcagttga 5221 aggaggatta cttcaagaag atcgagtgct tcgattctgt tgaaatctct ggagttgagg 5281 atagattcaa cgcttctctt ggaacctacc acgatctttt gaagatcatc aaggataagg 5341 atttccttga taacgaggag aacgaggaca tccttgagga catcgttctt acccttaccc 5401 ttttcgagga tagagagatg atcgaggaga gactcaagac ctacgctcac cttttcgatg 5461 ataaggttat gaagcagttg aagagaagaa gatacaccgg atggggtaga ctttctcgta 5521 agttgatcaa cggaatcaga gataagcagt ctggaaagac catccttgat ttcttgaagt 5581 ctgatggatt cgctaacaga aacttcatgc agcttatcca cgatgattct cttaccttca 5641 aggaggacat ccagaaggct caggtttctg gacagggaga ttctcttcac gagcacatcg 5701 ctaaccttgc tggatctcca gctatcaaga agggaatcct tcagaccgtt aaggttgttg 5761 atgagcttgt taaggttatg ggtagacaca agccagagaa catcgttatc gagatggcta 5821 gagagaacca gaccacccag aagggacaga agaactctcg tgagagaatg aagagaatcg 5881 aggagggaat caaggagctt ggatctcaaa tcttgaagga gcacccagtt gagaacaccc 5941 agcttcagaa cgagaagttg tacctttact accttcagaa cggaagagat atgtacgttg 6001 atcaggagct tgacatcaac agactttctg attacgatgt tgatcacatc gttccacagt 6061 ctttcttgaa ggatgattct atcgataaca aggttcttac ccgttctgat aagaacagag 6121 gaaagtctga taacgttcca tctgaggagg ttgttaagaa gatgaagaac tactggagac 6181 agcttcttaa cgctaagttg atcacccaga gaaagttcga taaccttacc aaggctgaga 6241 gaggaggact ttctgagctt gataaggctg gattcatcaa gagacagctt gttgagacca 6301 gacagatcac caagcacgtt gctcagatcc ttgattctcg tatgaacacc aagtacgatg 6361 agaacgataa gttgatcaga gaggttaagg ttatcacctt gaagtctaag ttggtttctg 6421 atttcagaaa ggatttccag ttctacaagg ttagagagat caacaactac caccacgctc 6481 acgatgctta ccttaacgct gttgttggaa ccgctcttat caagaagtac ccaaagttgg 6541 agtctgagtt cgtttacgga gattacaagg tttacgatgt tagaaagatg atcgctaagt 6601 ctgagcagga gatcggaaag gctaccgcta agtacttctt ctactctaac atcatgaact 6661 tcttcaagac cgagatcacc cttgctaacg gagagatcag aaagagacca cttatcgaga 6721 ccaacggaga gaccggagag atcgtttggg ataagggaag agatttcgct accgttagaa 6781 aggttctttc tatgccacag gttaacatcg ttaagaaaac cgaggttcag accggaggat 6841 tctctaagga gtctatcctt ccaaagagaa actctgataa gttgatcgct agaaagaagg 6901 attgggaccc aaagaagtac ggaggattcg attctccaac cgttgcttac tctgttcttg 6961 ttgttgctaa ggttgagaag ggaaagtcta agaagttgaa gtctgttaag gagcttcttg 7021 gaatcaccat catggagcgt tcttctttcg agaagaaccc aatcgatttc cttgaggcta 7081 agggatacaa ggaggttaag aaggatctta tcatcaagtt gccaaagtac tctcttttcg 7141 agcttgagaa cggaagaaag agaatgcttg cttctgctgg agagcttcag aagggaaacg 7201 agcttgctct tccatctaag tacgttaact tcctttacct tgcttctcac tacgagaagt 7261 tgaagggatc tccagaggat aacgagcaga agcagctttt cgttgagcag cacaagcact 7321 accttgatga gatcatcgag caaatctctg agttctctaa gagagttatc cttgctgatg 7381 ctaaccttga taaggttctt tctgcttaca acaagcacag agataagcca atcagagagc 7441 aggctgagaa catcatccac cttttcaccc ttaccaacct tggtgctcca gctgctttca 7501 agtacttcga taccaccatc gatagaaaaa gatacacctc taccaaggag gttcttgatg 7561 ctacccttat ccaccagtct atcaccggac tttacgagac cagaatcgat ctttctcagc 7621 ttggaggaga taagagacca gctgctacca agaaggctgg acaggctaag aagaagaagt 7681 gactgcagat cgttcaaaca tttggcaata aagtttctta agattgaatc ctgttgccgg 7741 tcttgcgatg attatcatat aatttctgtt gaattacgtt aagcatgtaa taattaacat 7801 gtaatgcatg acgttattta tgagatgggt ttttatgatt agagtcccgc aattatacat 7861 ttaatacgcg atagaaaaca aaatatagcg cgcaaactag gataaattat cgcgcgcggt 7921 gtcatctatg ttactagatc //
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HBTpcoCas9载体质粒应用举例
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