质粒名称: | SaBE4 |
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出品公司: | Addgene |
目录编号: | 100805 |
存储实验室: | David Liu |
载体骨架基本信息 |
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载体名称: | pCMV |
载体出品公司: | -- |
载体抗性: | 氨苄青霉素 |
空载体大小: | 3402 bp |
完整质粒大小: | 8034 bp |
载体修饰: | -- |
载体类型: | 哺乳细胞表达 |
筛选标记: | -- |
高拷贝/低拷贝: | 高拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | SaBE4 |
物种来源: | R、 褐家鼠,合成;金黄色葡萄球菌 |
插入大小: | 4632 bp |
基因突变: | -- |
GenBank编号 | -- |
启动子 | CMV |
标签/融合蛋白: | -- |
克隆方法: | 吉布森克隆 |
5' 克隆位点: | -- |
3' 克隆位点: | -- |
5' 测序引物 | T7 |
3' 测序引物 | M13R |
文献引用方法 |
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材料和方法部分: | SaBE4 was a gift from David Liu (Addgene plasmid # 100805 ; http://n2t.net/addgene:100805 ; RRID:Addgene_100805) |
参考文献部分: | Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T:A base editors with higher efficiency and product purity. Komor AC, Zhao KT, Packer MS, Gaudelli NM, Waterbury AL, Koblan LW, Kim YB, Badran AH, Liu DR. Sci Adv. 2017 Aug 30;3(8):eaao4774. doi: 10.1126/sciadv.aao4774. eCollection 2017 Aug. aao4774 [pii] PubMed 28875174 |
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载体序列
LOCUS SaBE4 8034 bp ds-DNA circular SYN 06-AUG-2018 DEFINITION Expresses SaBE4 in mammalian cells. ACCESSION . VERSION . KEYWORDS SaBE4 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8034) AUTHORS Komor AC, Zhao KT, Packer MS, Gaudelli NM, Waterbury AL, Koblan LW, Kim YB, Badran AH, Liu DR TITLE Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T:A base editors with higher efficiency and product purity. JOURNAL Sci Adv. 2017 Aug 30;3(8):eaao4774. doi: 10.1126/sciadv.aao4774. eCollection 2017 Aug. PUBMED 28875174 REFERENCE 2 (bases 1 to 8034) AUTHORS . TITLE Direct Submission JOURNAL Exported Aug 6, 2018 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..8034 /organism="synthetic DNA construct" /mol_type="other DNA" promoter 132..335 /label=CMV promoter /note="human cytomegalovirus (CMV) immediate early promoter" primer_bind 286..306 /label=CMV-F /note="Human CMV immediate early promoter, forward primer" primer_bind 377..396 /label=T7 /note="T7 promoter, forward primer" promoter 377..395 /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" CDS 409..1095 /codon_start=1 /product="cytidine deaminase (C to U editing enzyme) from rat" /label=APOBEC-1 /note="can use ssDNA as a substrate (Komor et al., 2016)" /translation="MSSETGPVAVDPTLRRRIEPHEFEVFFDPRELRKETCLLYEINWG GRHSIWRHTSQNTNKHVEVNFIEKFTTERYFCPNTRCSITWFLSWSPCGECSRAITEFL SRYPHVTLFIYIARLYHHADPRNRQGLRDLISSGVTIQIMTEQESGYCWRNFVNYSPSN EAHWPRYPHLWVRLYVLELYCIILGLPPCLNILRRKQPQLTFFTIALQSCHYQRLPPHI LWATGLK" CDS 4357..4377 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS 4384..4449 /codon_start=1 /product="three tandem FLAG(R) epitope tags, followed by an enterokinase cleavage site" /label=3xFLAG /translation="DYKDHDGDYKDHDIDYKDDDDK" CDS 4480..4728 /codon_start=1 /product="uracil-DNA glycosylase inhibitor from a Bacillus subtilis bacteriophage (Mol et al., 1995)" /label=UGI /translation="TNLSDIIEKETGKQLVIQESILMLPEEVEEVIGNKPESDILVHTA YDESTDENVMLLTSDAPEYKPWALVIQDSNGENKIKML" CDS 4759..5007 /codon_start=1 /product="uracil-DNA glycosylase inhibitor from a Bacillus subtilis bacteriophage (Mol et al., 1995)" /label=UGI /translation="TNLSDIIEKETGKQLVIQESILMLPEEVEEVIGNKPESDILVHTA YDESTDENVMLLTSDAPEYKPWALVIQDSNGENKIKML" CDS 5020..5040 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS 5049..5066 /codon_start=1 /product="6xHis affinity tag" /label=6xHis /translation="HHHHHH" primer_bind complement(5089..5106) /label=BGH-rev /note="Bovine growth hormone terminator, reverse primer. Also called BGH reverse" polyA_signal 5095..5319 /label=bGH poly(A) signal /note="bovine growth hormone polyadenylation signal" primer_bind complement(5390..5406) /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5390..5406) /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind complement(5403..5425) /label=M13/pUC Reverse /note="In lacZ gene" protein_bind 5414..5430 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." promoter complement(5438..5468) /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 5483..5504 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." primer_bind complement(5621..5638) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(5792..6380) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(5872..5891) /label=pBR322ori-F /note="pBR322 origin, forward primer" CDS complement(6551..7411) /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind 7174..7193 /label=Amp-R /note="Ampicillin resistance gene, reverse primer" promoter complement(7412..7516) /gene="bla" /label=AmpR promoter primer_bind complement(7595..7614) /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" enhancer 7786..131 /label=CMV enhancer /note="human cytomegalovirus immediate early enhancer" ORIGIN 1 atatgccaag tacgccccct attgacgtca atgacggtaa atggcccgcc tggcattatg 61 cccagtacat gaccttatgg gactttccta cttggcagta catctacgta ttagtcatcg 121 ctattaccat ggtgatgcgg ttttggcagt acatcaatgg gcgtggatag cggtttgact 181 cacggggatt tccaagtctc caccccattg acgtcaatgg gagtttgttt tggcaccaaa 241 atcaacggga ctttccaaaa tgtcgtaaca actccgcccc attgacgcaa atgggcggta 301 ggcgtgtacg gtgggaggtc tatataagca gagctggttt agtgaaccgt cagatccgct 361 agagatccgc ggccgctaat acgactcact atagggagag ccgccaccat gagctcagag 421 actggcccag tggctgtgga ccccacattg agacggcgga tcgagcccca tgagtttgag 481 gtattcttcg atccgagaga gctccgcaag gagacctgcc tgctttacga aattaattgg 541 gggggccggc actccatttg gcgacataca tcacagaaca ctaacaagca cgtcgaagtc 601 aacttcatcg agaagttcac gacagaaaga tatttctgtc cgaacacaag gtgcagcatt 661 acctggtttc tcagctggag cccatgcggc gaatgtagta gggccatcac tgaattcctg 721 tcaaggtatc cccacgtcac tctgtttatt tacatcgcaa ggctgtacca ccacgctgac 781 ccccgcaatc gacaaggcct gcgggatttg atctcttcag gtgtgactat ccaaattatg 841 actgagcagg agtcaggata ctgctggaga aactttgtga attatagccc gagtaatgaa 901 gcccactggc ctaggtatcc ccatctgtgg gtacgactgt acgttcttga actgtactgc 961 atcatactgg gcctgcctcc ttgtctcaac attctgagaa ggaagcagcc acagctgaca 1021 ttctttacca tcgctcttca gtcttgtcat taccagcgac tgcccccaca cattctctgg 1081 gccaccgggt tgaaatctgg tggttcttct ggtggttcta gcggcagcga gactcccggg 1141 acctcagagt ccgccacacc cgaaagttct ggtggttctt ctggtggttc tgggaaacgg 1201 aactacatcc tggggcttgc cattgggata accagcgttg gctacggaat tattgattat 1261 gagacacgcg atgtgattga cgccggggtt aggctgttca aagaggccaa cgttgaaaac 1321 aacgagggaa gacggagtaa gcgcggagca agaagactca agcgcagacg gagacatcgg 1381 attcagaggg tgaaaaagct gctcttcgat tacaatctcc tgaccgatca tagtgagctg 1441 agcggaatca acccctacga ggcgcgagtg aaagggcttt cccagaagct gtccgaagag 1501 gagttctccg ccgcgttgct gcacctggcc aaacggaggg gggttcacaa tgtaaacgaa 1561 gtggaggagg acacgggcaa tgaacttagt acgaaagaac agatcagtag gaactctaag 1621 gctctcgaag agaaatacgt cgctgagttg cagcttgaga gactgaaaaa agacggcgaa 1681 gtacgcggat ctattaatag gttcaagact tcagattacg taaaggaagc caagcagctc 1741 ctgaaagtac agaaagcgta ccatcagctc gatcagagct tcatcgatac ctacatagat 1801 ttgctggaga cacggaggac atactacgag ggcccagggg aaggatctcc ttttgggtgg 1861 aaggacatca aggaatggta cgagatgctt atgggacatt gtacatattt tccggaggag 1921 ctcaggagcg tcaagtacgc ctacaatgcc gacctgtaca atgccctcaa tgacctcaat 1981 aacctcgtga ttaccaggga cgagaacgag aagctggagt actatgaaaa gttccagatt 2041 atcgagaatg tgtttaagca gaagaagaag ccgacactta agcagattgc aaaggaaatc 2101 ctcgtgaatg aggaagatat caagggatac agagtgacaa gtacaggcaa gcccgagttc 2161 acaaatctga aggtgtacca cgatattaag gacataaccg cacgaaagga gataatcgaa 2221 aacgctgagc tcctcgatca gatcgcaaaa attcttacca tctaccagtc tagtgaggac 2281 attcaggagg aactgactaa tctgaacagt gagctcaccc aagaggaaat tgagcagatt 2341 tcaaacctga aaggctacac cgggacgcac aatctgagcc tcaaagcaat caacctcatt 2401 ctggatgaac tttggcacac aaatgacaac caaattgcca tattcaaccg cctgaaactg 2461 gtgccaaaaa aagtggatct gtcacagcaa aaggaaatcc ctacaacctt ggttgacgat 2521 tttattctgt cccccgttgt caagcggagc ttcatccagt caatcaaggt gatcaatgcc 2581 atcattaaaa aatacggatt gccaaacgat ataattatcg agcttgcacg agagaagaac 2641 tcaaaggacg cccagaagat gattaacgaa atgcagaagc gcaaccgcca gacaaacgaa 2701 cgcatagagg aaattataag aacaaccggc aaagagaatg ccaagtatct gatcgagaaa 2761 atcaagctgc acgacatgca agaaggcaag tgcctgtact ctctggaagc tatcccactc 2821 gaagatctgc tgaataatcc attcaattac gaggtggacc acatcatccc tagatccgta 2881 agctttgaca attccttcaa taacaaagtt ctggttaaac aggaggaaaa ttctaaaaaa 2941 gggaaccgga ccccgttcca gtacctgagc tccagtgaca gcaagattag ctacgagact 3001 tttaagaaac atattctgaa tctggccaaa ggcaaaggca ggatcagcaa gaccaagaag 3061 gagtacctcc tcgaagaacg cgacattaac agatttagtg tgcagaaaga tttcatcaac 3121 cgaaaccttg tcgatactcg gtacgccacg agaggcctga tgaatctcct caggagctac 3181 ttccgcgtca ataatctgga cgttaaagtc aagagcataa atgggggatt caccagcttt 3241 ctgaggagaa agtggaagtt taagaaggaa cgaaacaaag gatacaagca ccatgctgag 3301 gatgctttga tcatcgctaa cgcggacttt atctttaagg aatggaaaaa gctggataag 3361 gcaaagaaag tgatggaaaa ccagatgttc gaggagaagc aggcagagtc aatgcctgag 3421 atcgagacag agcaggaata caaggaaatt ttcatcaccc ctcatcagat taaacacata 3481 aaggacttca aagactataa atactctcat agggtggaca aaaaacccaa tcgcgagctc 3541 attaatgaca ccctgtactc aacacggaag gatgataaag gtaatacctt gattgtgaat 3601 aatcttaatg gattgtatga caaagataac gacaagctca agaagctgat caacaagtct 3661 ccagagaagc tccttatgta tcaccacgac ccacagactt atcagaaatt gaaactgatc 3721 atggagcaat acggggatga gaagaaccca ctctacaaat attatgagga aacaggtaat 3781 tacctgacca agtactccaa gaaggataac ggaccagtga tcaaaaagat aaagtactat 3841 ggcaacaaac ttaatgcgca tttggacata actgacgatt accccaattc tcgaaacaag 3901 gttgtgaagc tctccctgaa gccttataga tttgacgtgt acctggataa tggggtttat 3961 aaattcgtca ccgtgaaaaa tctggacgtg atcaaaaagg agaactatta tgaagtaaac 4021 tcaaagtgct atgaggaggc gaagaagctg aagaagatct ccaatcaggc cgagttcatc 4081 gcttccttct ataataacga tctcatcaag atcaatggag agctttatcg cgtcattggt 4141 gtgaacaatg acttgctgaa caggatcgaa gtcaatatga tagacattac ctaccgggag 4201 tatctcgaaa acatgaatga taaacggccg cctcgcatca tcaagacaat cgcatctaaa 4261 actcagtcaa taaaaaagta ctctaccgat atcctgggga atctctatga agtgaagtca 4321 aagaagcacc cacaaatcat taaaaaaggt ggatccccca agaagaagag gaaagtctcg 4381 agcgactaca aagaccatga cggtgattat aaagatcatg acatcgatta caaggatgac 4441 gatgacaagt ctggtggttc tggaggatct ggtggttcta ctaatctgtc agatattatt 4501 gaaaaggaga ccggtaagca actggttatc caggaatcca tcctcatgct cccagaggag 4561 gtggaagaag tcattgggaa caagccggaa agcgatatac tcgtgcacac cgcctacgac 4621 gagagcaccg acgagaatgt catgcttctg actagcgacg cccctgaata caagccttgg 4681 gctctggtca tacaggatag caacggtgag aacaagatta agatgctctc tggtggttct 4741 ggaggatctg gtggttctac taatctgtca gatattattg aaaaggagac cggtaagcaa 4801 ctggttatcc aggaatccat cctcatgctc ccagaggagg tggaagaagt cattgggaac 4861 aagccggaaa gcgatatact cgtgcacacc gcctacgacg agagcaccga cgagaatgtc 4921 atgcttctga ctagcgacgc ccctgaatac aagccttggg ctctggtcat acaggatagc 4981 aacggtgaga acaagattaa gatgctctct ggtggttctc ccaagaagaa gaggaaagtc 5041 taaccggtca tcatcaccat caccattgag tttaaacccg ctgatcagcc tcgactgtgc 5101 cttctagttg ccagccatct gttgtttgcc cctcccccgt gccttccttg accctggaag 5161 gtgccactcc cactgtcctt tcctaataaa atgaggaaat tgcatcgcat tgtctgagta 5221 ggtgtcattc tattctgggg ggtggggtgg ggcaggacag caagggggag gattgggaag 5281 acaatagcag gcatgctggg gatgcggtgg gctctatggc ttctgaggcg gaaagaacca 5341 gctggggctc gataccgtcg acctctagct agagcttggc gtaatcatgg tcatagctgt 5401 ttcctgtgtg aaattgttat ccgctcacaa ttccacacaa catacgagcc ggaagcataa 5461 agtgtaaagc ctagggtgcc taatgagtga gctaactcac attaattgcg ttgcgctcac 5521 tgcccgcttt ccagtcggga aacctgtcgt gccagctgca ttaatgaatc ggccaacgcg 5581 cggggagagg cggtttgcgt attgggcgct cttccgcttc ctcgctcact gactcgctgc 5641 gctcggtcgt tcggctgcgg cgagcggtat cagctcactc aaaggcggta atacggttat 5701 ccacagaatc aggggataac gcaggaaaga acatgtgagc aaaaggccag caaaaggcca 5761 ggaaccgtaa aaaggccgcg ttgctggcgt ttttccatag gctccgcccc cctgacgagc 5821 atcacaaaaa tcgacgctca agtcagaggt ggcgaaaccc gacaggacta taaagatacc 5881 aggcgtttcc ccctggaagc tccctcgtgc gctctcctgt tccgaccctg ccgcttaccg 5941 gatacctgtc cgcctttctc ccttcgggaa gcgtggcgct ttctcatagc tcacgctgta 6001 ggtatctcag ttcggtgtag gtcgttcgct ccaagctggg ctgtgtgcac gaaccccccg 6061 ttcagcccga ccgctgcgcc ttatccggta actatcgtct tgagtccaac ccggtaagac 6121 acgacttatc gccactggca gcagccactg gtaacaggat tagcagagcg aggtatgtag 6181 gcggtgctac agagttcttg aagtggtggc ctaactacgg ctacactaga agaacagtat 6241 ttggtatctg cgctctgctg aagccagtta ccttcggaaa aagagttggt agctcttgat 6301 ccggcaaaca aaccaccgct ggtagcggtg gtttttttgt ttgcaagcag cagattacgc 6361 gcagaaaaaa aggatctcaa gaagatcctt tgatcttttc tacggggtct gacgctcagt 6421 ggaacgaaaa ctcacgttaa gggattttgg tcatgagatt atcaaaaagg atcttcacct 6481 agatcctttt aaattaaaaa tgaagtttta aatcaatcta aagtatatat gagtaaactt 6541 ggtctgacag ttaccaatgc ttaatcagtg aggcacctat ctcagcgatc tgtctatttc 6601 gttcatccat agttgcctga ctccccgtcg tgtagataac tacgatacgg gagggcttac 6661 catctggccc cagtgctgca atgataccgc gagacccacg ctcaccggct ccagatttat 6721 cagcaataaa ccagccagcc ggaagggccg agcgcagaag tggtcctgca actttatccg 6781 cctccatcca gtctattaat tgttgccggg aagctagagt aagtagttcg ccagttaata 6841 gtttgcgcaa cgttgttgcc attgctacag gcatcgtggt gtcacgctcg tcgtttggta 6901 tggcttcatt cagctccggt tcccaacgat caaggcgagt tacatgatcc cccatgttgt 6961 gcaaaaaagc ggttagctcc ttcggtcctc cgatcgttgt cagaagtaag ttggccgcag 7021 tgttatcact catggttatg gcagcactgc ataattctct tactgtcatg ccatccgtaa 7081 gatgcttttc tgtgactggt gagtactcaa ccaagtcatt ctgagaatag tgtatgcggc 7141 gaccgagttg ctcttgcccg gcgtcaatac gggataatac cgcgccacat agcagaactt 7201 taaaagtgct catcattgga aaacgttctt cggggcgaaa actctcaagg atcttaccgc 7261 tgttgagatc cagttcgatg taacccactc gtgcacccaa ctgatcttca gcatctttta 7321 ctttcaccag cgtttctggg tgagcaaaaa caggaaggca aaatgccgca aaaaagggaa 7381 taagggcgac acggaaatgt tgaatactca tactcttcct ttttcaatat tattgaagca 7441 tttatcaggg ttattgtctc atgagcggat acatatttga atgtatttag aaaaataaac 7501 aaataggggt tccgcgcaca tttccccgaa aagtgccacc tgacgtcgac ggatcgggag 7561 atcgatctcc cgatccccta gggtcgactc tcagtacaat ctgctctgat gccgcatagt 7621 taagccagta tctgctccct gcttgtgtgt tggaggtcgc tgagtagtgc gcgagcaaaa 7681 tttaagctac aacaaggcaa ggcttgaccg acaattgcat gaagaatctg cttagggtta 7741 ggcgttttgc gctgcttcgc gatgtacggg ccagatatac gcgttgacat tgattattga 7801 ctagttatta atagtaatca attacggggt cattagttca tagcccatat atggagttcc 7861 gcgttacata acttacggta aatggcccgc ctggctgacc gcccaacgac ccccgcccat 7921 tgacgtcaat aatgacgtat gttcccatag taacgccaat agggactttc cattgacgtc 7981 aatgggtgga gtatttacgg taaactgccc acttggcagt acatcaagtg tatc //
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