质粒名称: | pCMV-dCpf1-BE0 |
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出品公司: | 爱迪基因 |
目录编号: | 107678 |
存储实验室: | Jia Chen |
载体骨架基本信息 |
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载体名称: | CMV |
载体出品公司: | -- |
载体抗性: | 氨苄青霉素 |
空载体大小: | -- |
完整质粒大小: | -- |
载体修饰: | -- |
载体类型: | 哺乳细胞表达 |
筛选标记: | -- |
高拷贝/低拷贝: | 高拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | dLbCpf1-BE0,pCMV-APOBEC1-XTEN-dLbCpf1(D832A/E1006A/D1125A)-SV40NLS-SGGS-UGI-SV40NLS |
物种来源: | R. norvegicus (rat); Lachnospiraceae bacterium, Bacteriophage PBS2 |
插入大小: | 4740 bp |
基因突变: | D832A/E925/D1148A |
GenBank编号 | -- |
启动子 | CMV |
标签/融合蛋白: | -- |
克隆方法: | Gibson克隆 |
5' 克隆位点: | -- |
3' 克隆位点: | -- |
5' 测序引物 | CMV |
3' 测序引物 | BGH poly reverse |
文献引用方法 |
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材料和方法部分: | pCMV-dCpf1-BE0 was a gift from Jia Chen (Addgene plasmid # 107678 ; http://n2t.net/addgene:107678 ; RRID:Addgene_107678) |
参考文献部分: | Base editing with a Cpf1-cytidine deaminase fusion. Li X, Wang Y, Liu Y, Yang B, Wang X, Wei J, Lu Z, Zhang Y, Wu J, Huang X, Yang L, Chen J. Nat Biotechnol. 2018 Mar 19. pii: nbt.4102. doi: 10.1038/nbt.4102. 10.1038/nbt.4102 PubMed 29553573 |
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载体基本信息
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载体简介
载体序列
LOCUS pCMV-dCpf1-BE0 8142 bp ds-DNA circular SYN 06-AUG-2018 DEFINITION Expresses dLbCpf1-BE0 in mammalian cells. ACCESSION . VERSION . KEYWORDS pCMV-dCpf1-BE0 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8142) AUTHORS Li X, Wang Y, Liu Y, Yang B, Wang X, Wei J, Lu Z, Zhang Y, Wu J, Huang X, Yang L, Chen J TITLE Base editing with a Cpf1-cytidine deaminase fusion. JOURNAL Nat Biotechnol. 2018 Mar 19. pii: nbt.4102. doi: 10.1038/nbt.4102. PUBMED 29553573 REFERENCE 2 (bases 1 to 8142) AUTHORS . TITLE Direct Submission JOURNAL Exported Aug 6, 2018 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..8142 /organism="synthetic DNA construct" /mol_type="other DNA" enhancer 44..423 /label=CMV enhancer /note="human cytomegalovirus immediate early enhancer" promoter 424..627 /label=CMV promoter /note="human cytomegalovirus (CMV) immediate early promoter" primer_bind 578..598 /label=CMV-F /note="Human CMV immediate early promoter, forward primer" primer_bind 669..688 /label=T7 /note="T7 promoter, forward primer" promoter 669..687 /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" CDS 701..1387 /codon_start=1 /product="cytidine deaminase (C to U editing enzyme) from rat" /label=APOBEC-1 /note="can use ssDNA as a substrate (Komor et al., 2016)" /translation="MSSETGPVAVDPTLRRRIEPHEFEVFFDPRELRKETCLLYEINWG GRHSIWRHTSQNTNKHVEVNFIEKFTTERYFCPNTRCSITWFLSWSPCGECSRAITEFL SRYPHVTLFIYIARLYHHADPRNRQGLRDLISSGVTIQIMTEQESGYCWRNFVNYSPSN EAHWPRYPHLWVRLYVLELYCIILGLPPCLNILRRKQPQLTFFTIALQSCHYQRLPPHI LWATGLK" CDS 5126..5146 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS 5159..5407 /codon_start=1 /product="uracil-DNA glycosylase inhibitor from a Bacillus subtilis bacteriophage (Mol et al., 1995)" /label=UGI /translation="TNLSDIIEKETGKQLVIQESILMLPEEVEEVIGNKPESDILVHTA YDESTDENVMLLTSDAPEYKPWALVIQDSNGENKIKML" CDS 5420..5440 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS 5449..5466 /codon_start=1 /product="6xHis affinity tag" /label=6xHis /translation="HHHHHH" primer_bind complement(5489..5506) /label=BGH-rev /note="Bovine growth hormone terminator, reverse primer. Also called BGH reverse" polyA_signal 5495..5719 /label=bGH poly(A) signal /note="bovine growth hormone polyadenylation signal" primer_bind complement(5790..5806) /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5790..5806) /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind complement(5803..5825) /label=M13/pUC Reverse /note="In lacZ gene" protein_bind 5814..5830 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." promoter complement(5838..5868) /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 5883..5904 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." primer_bind complement(6021..6038) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(6192..6780) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(6272..6291) /label=pBR322ori-F /note="pBR322 origin, forward primer" CDS complement(6951..7811) /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind 7574..7593 /label=Amp-R /note="Ampicillin resistance gene, reverse primer" promoter complement(7812..7916) /gene="bla" /label=AmpR promoter primer_bind complement(7995..8014) /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" ORIGIN 1 cgttttgcgc tgcttcgcga tgtacgggcc agatatacgc gttgacattg attattgact 61 agttattaat agtaatcaat tacggggtca ttagttcata gcccatatat ggagttccgc 121 gttacataac ttacggtaaa tggcccgcct ggctgaccgc ccaacgaccc ccgcccattg 181 acgtcaataa tgacgtatgt tcccatagta acgccaatag ggactttcca ttgacgtcaa 241 tgggtggagt atttacggta aactgcccac ttggcagtac atcaagtgta tcatatgcca 301 agtacgcccc ctattgacgt caatgacggt aaatggcccg cctggcatta tgcccagtac 361 atgaccttat gggactttcc tacttggcag tacatctacg tattagtcat cgctattacc 421 atggtgatgc ggttttggca gtacatcaat gggcgtggat agcggtttga ctcacgggga 481 tttccaagtc tccaccccat tgacgtcaat gggagtttgt tttggcacca aaatcaacgg 541 gactttccaa aatgtcgtaa caactccgcc ccattgacgc aaatgggcgg taggcgtgta 601 cggtgggagg tctatataag cagagctggt ttagtgaacc gtcagatccg ctagagatcc 661 gcggccgcta atacgactca ctatagggag agccgccacc atgagctcag agactggccc 721 agtggctgtg gaccccacat tgagacggcg gatcgagccc catgagtttg aggtattctt 781 cgatccgaga gagctccgca aggagacctg cctgctttac gaaattaatt gggggggccg 841 gcactccatt tggcgacata catcacagaa cactaacaag cacgtcgaag tcaacttcat 901 cgagaagttc acgacagaaa gatatttctg tccgaacaca aggtgcagca ttacctggtt 961 tctcagctgg agcccatgcg gcgaatgtag tagggccatc actgaattcc tgtcaaggta 1021 tccccacgtc actctgttta tttacatcgc aaggctgtac caccacgctg acccccgcaa 1081 tcgacaaggc ctgcgggatt tgatctcttc aggtgtgact atccaaatta tgactgagca 1141 ggagtcagga tactgctgga gaaactttgt gaattatagc ccgagtaatg aagcccactg 1201 gcctaggtat ccccatctgt gggtacgact gtacgttctt gaactgtact gcatcatact 1261 gggcctgcct ccttgtctca acattctgag aaggaagcag ccacagctga cattctttac 1321 catcgctctt cagtcttgtc attaccagcg actgccccca cacattctct gggccaccgg 1381 gttgaaaagc ggcagcgaga ctcccgggac ctcagagtcc gccacacccg aaagtatgtc 1441 aaagctggag aaattcacca actgttatag cctgtctaag accctgcgct tcaaggcaat 1501 cccagtgggc aagacacaag agaacattga caacaaacgg ctcctggtgg aggatgagaa 1561 gagggctgaa gattacaagg gcgttaagaa gctgctggat aggtactatc tgtcattcat 1621 caacgatgtc ctccacagta tcaagctgaa gaatctgaac aattacattt ctctgttccg 1681 gaagaagaca cggaccgaga aggagaacaa agagctggag aatctggaga tcaacctgag 1741 gaaagaaata gctaaggctt tcaaagggaa cgagggttac aagtccctgt tcaagaaaga 1801 cattatcgag actattctgc ctgagttcct ggacgataaa gatgagatcg ccctcgtcaa 1861 ttccttcaat gggtttacca cagcctttac cggcttcttc gacaatagag agaatatgtt 1921 ctctgaagag gccaaatcca ctagcatcgc ctttcgctgc ataaacgaga acctgactag 1981 gtacatcagc aatatggaca tctttgagaa agtcgatgcc atattcgaca aacatgaggt 2041 gcaggagatt aaggagaaga tcctgaactc agattacgat gtcgaagatt tcttcgaggg 2101 agagttcttc aacttcgtgc tcacacaaga gggcattgat gtgtacaatg caatcattgg 2161 agggttcgtg acagagagtg gcgagaagat aaagggcctg aacgagtata tcaacctcta 2221 caaccagaaa accaagcaga aactgcctaa gttcaagcca ctgtacaaac aagtgctctc 2281 agatagggaa agcctgagct tctacggtga agggtataca tcagatgaag aagtgctcga 2341 agtgttccgc aacaccctca ataagaacag tgaaatcttc tcttcaatca agaagctgga 2401 gaaactgttc aagaatttcg atgagtactc ctctgccgga atctttgtga agaatggccc 2461 tgcaatatcc actattagca aagacatctt tggcgagtgg aacgttatca gggataagtg 2521 gaatgccgag tacgatgata ttcatctcaa gaagaaagcc gtggttacag agaaatacga 2581 ggatgataga cgcaagagct ttaagaagat tggtagcttc tctctcgaac agctgcagga 2641 gtacgccgac gctgacctgt cagtcgtgga gaaactcaag gagatcataa tccagaaggt 2701 ggatgaaatc tacaaagtgt atggaagctc tgagaaactc ttcgatgcag actttgttct 2761 ggagaagagt ctgaagaaga acgacgcagt ggttgctatc atgaaggacc tgctggattc 2821 tgttaagtct ttcgagaatt acattaaggc attctttggt gaagggaagg agacaaatag 2881 ggacgagagc ttctatggcg actttgttct ggcctacgac atcctcctca aggttgacca 2941 catctatgac gctatacgga attacgttac ccagaagccc tatagcaaag acaagttcaa 3001 gctgtatttc cagaatccac agtttatggg tgggtgggat aaagacaaag aaacagatta 3061 cagggccact atcctgcggt acggcagcaa atactatctg gctatcatgg ataagaagta 3121 cgccaaatgc ctccagaaga tcgacaagga cgacgtgaac ggtaactacg agaagatcaa 3181 ttacaagctc ctgccaggac ctaacaagat gctgcccaag gtgttcttct ccaagaaatg 3241 gatggcctac tataacccaa gcgaggacat tcagaagata tacaagaatg ggacattcaa 3301 gaagggcgat atgttcaacc tcaacgactg ccacaagctg attgatttct tcaaggatag 3361 catttctcgc tatcccaagt ggtctaatgc atacgatttc aacttcagcg agactgagaa 3421 gtacaaagac atcgctggct tctaccggga ggtggaagag caaggctata aggtgtcatt 3481 cgaatccgct tctaagaagg aagtggataa gctcgtggaa gagggtaagc tgtacatgtt 3541 ccagatatac aacaaagact tcagcgataa gagccacggc actccaaacc tccatactat 3601 gtatttcaag ctgctgtttg acgagaacaa ccacggacag attaggctgt caggaggcgc 3661 agaactcttc atgcgcagag cttcactgaa gaaggaggaa ctcgttgtcc acccagccaa 3721 tagccctata gccaataaga atccagacaa tcctaagaaa accactactc tgtcttacga 3781 tgtgtataag gataagagat tctctgaaga tcagtacgaa ctgcacatac ccattgccat 3841 taacaagtgc cctaagaaca tcttcaagat taacacagag gttagagtgc tcctgaaaca 3901 cgacgataac ccttatgtta taggcattgc tcgcggagag agaaacctgc tgtacatcgt 3961 cgtggtggac ggcaaaggca acatcgtgga acagtacagt ctcaatgaaa tcattaacaa 4021 tttcaacgga atccgcatta agaccgacta ccattctctc ctcgacaaga aggagaaaga 4081 aaggttcgaa gcaagacaga attggacaag tatagagaat atcaaagaac tgaaggctgg 4141 gtacatctct caggttgtgc acaagatatg tgagctggtg gagaagtacg acgctgttat 4201 cgccctcgcg gacctgaata gcggcttcaa gaactccagg gtgaaggtgg agaagcaggt 4261 gtatcagaag ttcgagaaga tgctgatcga caagctcaac tatatggtgg acaagaaatc 4321 caatccttgc gctactggtg gagccctgaa gggctatcaa atcaccaata agttcgaatc 4381 tttcaagtct atgagcaccc agaatggctt catcttctac atacccgcat ggctgacatc 4441 caagattgat ccctctaccg gatttgttaa tctgctcaag actaagtaca cctctattgc 4501 tgactcaaag aagttcatat catcatttga ccgcatcatg tacgtgccag aagaggacct 4561 gttcgagttt gccctggatt acaagaattt ctctcggact gacgccgact acatcaagaa 4621 gtggaagctc tactcttatg gtaatcggat tcgcatattc cgcaatccca agaagaataa 4681 cgtgttcgat tgggaggaag tttgcctcac cagcgcttac aaggagctgt tcaataagta 4741 tgggattaac taccagcagg gcgacataag agccctgctg tgcgaacaat ctgataaggc 4801 attctattcc tctttcatgg cactgatgtc actgatgctg caaatgcgca attccatcac 4861 cggaagaaca gacgtggcct ttctgatctc tcctgtcaag aactcagatg gcatcttcta 4921 cgattcccgc aactatgaag cacaggagaa tgctatcctg cctaagaatg ccgatgcaaa 4981 tggagcctat aacatcgcca gaaaggtcct ctgggccata ggacaattca agaaagctga 5041 agatgagaag ctggacaagg tgaagatcgc catttcaaac aaagagtggc tcgaatatgc 5101 tcagacctca gtgaagcatg gatcacccaa gaagaaacgg aaagtgtctg gtggttctac 5161 taatctgtca gatattattg aaaaggagac cggtaagcaa ctggttatcc aggaatccat 5221 cctcatgctc ccagaggagg tggaagaagt cattgggaac aagccggaaa gcgatatact 5281 cgtgcacacc gcctacgacg agagcaccga cgagaatgtc atgcttctga ctagcgacgc 5341 ccctgaatac aagccttggg ctctggtcat acaggatagc aacggtgaga acaagattaa 5401 gatgctctct ggtggttctc ccaagaagaa gaggaaagtc taaccggtca tcatcaccat 5461 caccattgag tttaaacccg ctgatcagcc tcgactgtgc cttctagttg ccagccatct 5521 gttgtttgcc cctcccccgt gccttccttg accctggaag gtgccactcc cactgtcctt 5581 tcctaataaa atgaggaaat tgcatcgcat tgtctgagta ggtgtcattc tattctgggg 5641 ggtggggtgg ggcaggacag caagggggag gattgggaag acaatagcag gcatgctggg 5701 gatgcggtgg gctctatggc ttctgaggcg gaaagaacca gctggggctc gataccgtcg 5761 acctctagct agagcttggc gtaatcatgg tcatagctgt ttcctgtgtg aaattgttat 5821 ccgctcacaa ttccacacaa catacgagcc ggaagcataa agtgtaaagc ctagggtgcc 5881 taatgagtga gctaactcac attaattgcg ttgcgctcac tgcccgcttt ccagtcggga 5941 aacctgtcgt gccagctgca ttaatgaatc ggccaacgcg cggggagagg cggtttgcgt 6001 attgggcgct cttccgcttc ctcgctcact gactcgctgc gctcggtcgt tcggctgcgg 6061 cgagcggtat cagctcactc aaaggcggta atacggttat ccacagaatc aggggataac 6121 gcaggaaaga acatgtgagc aaaaggccag caaaaggcca ggaaccgtaa aaaggccgcg 6181 ttgctggcgt ttttccatag gctccgcccc cctgacgagc atcacaaaaa tcgacgctca 6241 agtcagaggt ggcgaaaccc gacaggacta taaagatacc aggcgtttcc ccctggaagc 6301 tccctcgtgc gctctcctgt tccgaccctg ccgcttaccg gatacctgtc cgcctttctc 6361 ccttcgggaa gcgtggcgct ttctcatagc tcacgctgta ggtatctcag ttcggtgtag 6421 gtcgttcgct ccaagctggg ctgtgtgcac gaaccccccg ttcagcccga ccgctgcgcc 6481 ttatccggta actatcgtct tgagtccaac ccggtaagac acgacttatc gccactggca 6541 gcagccactg gtaacaggat tagcagagcg aggtatgtag gcggtgctac agagttcttg 6601 aagtggtggc ctaactacgg ctacactaga agaacagtat ttggtatctg cgctctgctg 6661 aagccagtta ccttcggaaa aagagttggt agctcttgat ccggcaaaca aaccaccgct 6721 ggtagcggtg gtttttttgt ttgcaagcag cagattacgc gcagaaaaaa aggatctcaa 6781 gaagatcctt tgatcttttc tacggggtct gacgctcagt ggaacgaaaa ctcacgttaa 6841 gggattttgg tcatgagatt atcaaaaagg atcttcacct agatcctttt aaattaaaaa 6901 tgaagtttta aatcaatcta aagtatatat gagtaaactt ggtctgacag ttaccaatgc 6961 ttaatcagtg aggcacctat ctcagcgatc tgtctatttc gttcatccat agttgcctga 7021 ctccccgtcg tgtagataac tacgatacgg gagggcttac catctggccc cagtgctgca 7081 atgataccgc gagacccacg ctcaccggct ccagatttat cagcaataaa ccagccagcc 7141 ggaagggccg agcgcagaag tggtcctgca actttatccg cctccatcca gtctattaat 7201 tgttgccggg aagctagagt aagtagttcg ccagttaata gtttgcgcaa cgttgttgcc 7261 attgctacag gcatcgtggt gtcacgctcg tcgtttggta tggcttcatt cagctccggt 7321 tcccaacgat caaggcgagt tacatgatcc cccatgttgt gcaaaaaagc ggttagctcc 7381 ttcggtcctc cgatcgttgt cagaagtaag ttggccgcag tgttatcact catggttatg 7441 gcagcactgc ataattctct tactgtcatg ccatccgtaa gatgcttttc tgtgactggt 7501 gagtactcaa ccaagtcatt ctgagaatag tgtatgcggc gaccgagttg ctcttgcccg 7561 gcgtcaatac gggataatac cgcgccacat agcagaactt taaaagtgct catcattgga 7621 aaacgttctt cggggcgaaa actctcaagg atcttaccgc tgttgagatc cagttcgatg 7681 taacccactc gtgcacccaa ctgatcttca gcatctttta ctttcaccag cgtttctggg 7741 tgagcaaaaa caggaaggca aaatgccgca aaaaagggaa taagggcgac acggaaatgt 7801 tgaatactca tactcttcct ttttcaatat tattgaagca tttatcaggg ttattgtctc 7861 atgagcggat acatatttga atgtatttag aaaaataaac aaataggggt tccgcgcaca 7921 tttccccgaa aagtgccacc tgacgtcgac ggatcgggag atcgatctcc cgatccccta 7981 gggtcgactc tcagtacaat ctgctctgat gccgcatagt taagccagta tctgctccct 8041 gcttgtgtgt tggaggtcgc tgagtagtgc gcgagcaaaa tttaagctac aacaaggcaa 8101 ggcttgaccg acaattgcat gaagaatctg cttagggtta gg //
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