质粒名称: | pLH-sgRNA1-boxB-MS2-PP7 |
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出品公司: | 爱迪基因 |
目录编号: | 75397 |
存储实验室: | Thoru Pederson |
载体骨架基本信息 |
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载体名称: | pLKO.1 |
载体抗性: | 氨苄青霉素 |
空载体大小: | 8000 bp |
完整质粒大小: | 8337 bp |
载体类型: | 哺乳动物表达,慢病毒,CRISPR |
筛选标记: | 潮霉素 |
高拷贝/低拷贝: | 高拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | sgRNA1-boxB-MS2-PP7 |
物种来源: | Synthetic |
插入大小: | 146 bp |
启动子 | U6 |
克隆方法: | 限制性内切酶 |
5' 克隆位点: | Sbf I (未破坏) |
3' 克隆位点: | EcoR I (未破坏) |
5' 测序引物 | cccttcaccgagggcctatttccc |
3' 测序引物 | CTATTCTTTCCCCTGCACTGTACCC |
文献引用方法 |
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材料和方法部分: | pLH-sgRNA1-boxB-MS2-PP7 was a gift from Thoru Pederson (Addgene plasmid # 75397 ; http://n2t.net/addgene:75397 ; RRID:Addgene_75397) |
参考文献部分: | Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T. Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. 10.1038/nbt.3526 PubMed 27088723 |
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载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS pLH-sgRNA1-boxB-MS2-PP7 8337 bp ds-DNA circular SYN 06-AUG-2018 DEFINITION sgRNA1-boxB-MS2-PP7. ACCESSION . VERSION . KEYWORDS pLH-sgRNA1-boxB-MS2-PP7 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8337) AUTHORS Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T TITLE Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. JOURNAL Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. PUBMED 27088723 REFERENCE 2 (bases 1 to 8337) AUTHORS . TITLE Direct Submission JOURNAL Exported Aug 6, 2018 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..8337 /organism="synthetic DNA construct" /mol_type="other DNA" primer_bind 94..111 /label=L4440 /note="L4440 vector, forward primer" protein_bind 228..249 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." promoter 264..294 /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 302..318 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." primer_bind 307..329 /label=M13/pUC Reverse /note="In lacZ gene" primer_bind 326..342 /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind 326..342 /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind 361..381 /label=T3 /note="T3 promoter, forward primer" promoter 363..381 /label=T3 promoter /note="promoter for bacteriophage T3 RNA polymerase" promoter 409..635 /label=RSV promoter /note="Rous sarcoma virus enhancer/promoter" LTR 636..816 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" misc_feature 863..988 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" misc_feature 1481..1714 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." promoter 2241..2481 /label=U6 promoter /note="RNA polymerase III promoter for human U6 snRNA" primer_bind 2241..2261 /label=hU6-F /note="Human U6 promoter, forward primer" primer_bind 2412..2431 /label=LKO.1 5' /note="Human U6 promoter, forward primer" CDS 2830..3135 /codon_start=1 /gene="ccdB" /product="CcdB, a bacterial toxin that poisons DNA gyrase" /label=ccdB /note="Plasmids containing the ccdB gene cannot be propagated in standard E. coli strains." /translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI" primer_bind 3014..3033 /label=ccdB-fwd /note="ccdB gene, forward primer" misc_RNA 3228..3246 /label=MS2 stem loop /note="stem loop that binds the bacteriophage MS2 coat protein" misc_feature 3350..3467 /label=cPPT/CTS /note="central polypurine tract and central termination sequence of HIV-1" promoter 3516..4026 /label=hPGK promoter /note="human phosphoglycerate kinase 1 promoter" primer_bind 3945..3963 /label=hPGK-F /note="Human PGK promoter, forward primer" CDS 4116..5141 /codon_start=1 /gene="aph(4)-Ia" /product="aminoglycoside phosphotransferase from E. coli" /label=HygR /note="confers resistance to hygromycin" /translation="MKKPELTATSVEKFLIEKFDSVSDLMQLSEGEESRAFSFDVGGRG YVLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQDLP ETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQ TVMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF GDSQYEVANIFFWRPWLACMEQQTRYFERRHPELAGSPRLRAYMLRIGLDQLYQSLVDG NFDDAAWAQGRCDAIVRSGAGTVGRTQIARRSAAVWTDGCVEVLADSGNRRPSTRPRAK E" primer_bind complement(5165..5181) /label=KS primer /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5166..5182) /label=pBluescriptKS /note="For pBluescript vector" LTR 5264..5497 /label=3' LTR (Delta-U3) /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" polyA_signal 5569..5690 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(5606..5625) /label=SV40pA-R /note="SV40 polyA, reverse primer" primer_bind 5660..5679 /label=EBV-rev /note="SV40 polyA terminator, reverse primer" rep_origin 5730..5865 /label=SV40 ori /note="SV40 origin of replication" primer_bind 5792..5811 /label=SV40pro-F /note="SV40 promoter/origin, forward primer" primer_bind complement(5885..5904) /label=T7 /note="T7 promoter, forward primer" promoter complement(5886..5904) /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" primer_bind complement(5914..5931) /label=M13 Forward /note="In lacZ gene. Also called M13-F20 or M13 (-21) Forward" primer_bind complement(5914..5930) /label=M13 fwd /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5923..5945) /label=M13/pUC Forward /note="In lacZ gene" rep_origin 6072..6527 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(6159..6178) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 6369..6390 /label=F1ori-F /note="F1 origin, forward primer" promoter 6553..6657 /gene="bla" /label=AmpR promoter CDS 6658..7518 /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind complement(6876..6895) /label=Amp-R /note="Ampicillin resistance gene, reverse primer" rep_origin 7689..8277 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind 8178..8197 /label=pBR322ori-F /note="pBR322 origin, forward primer" ORIGIN 1 ttctttcctg cgttatcccc tgattctgtg gataaccgta ttaccgcctt tgagtgagct 61 gataccgctc gccgcagccg aacgaccgag cgcagcgagt cagtgagcga ggaagcggaa 121 gagcgcccaa tacgcaaacc gcctctcccc gcgcgttggc cgattcatta atgcagctgg 181 cacgacaggt ttcccgactg gaaagcgggc agtgagcgca acgcaattaa tgtgagttag 241 ctcactcatt aggcacccca ggctttacac tttatgcttc cggctcgtat gttgtgtgga 301 attgtgagcg gataacaatt tcacacagga aacagctatg accatgatta cgccaagcgc 361 gcaattaacc ctcactaaag ggaacaaaag ctggagctgc aagcttaatg tagtcttatg 421 caatactctt gtagtcttgc aacatggtaa cgatgagtta gcaacatgcc ttacaaggag 481 agaaaaagca ccgtgcatgc cgattggtgg aagtaaggtg gtacgatcgt gccttattag 541 gaaggcaaca gacgggtctg acatggattg gacgaaccac tgaattgccg cattgcagag 601 atattgtatt taagtgccta gctcgataca taaacgggtc tctctggtta gaccagatct 661 gagcctggga gctctctggc taactaggga acccactgct taagcctcaa taaagcttgc 721 cttgagtgct tcaagtagtg tgtgcccgtc tgttgtgtga ctctggtaac tagagatccc 781 tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa 841 agcgaaaggg aaaccagagg agctctctcg acgcaggact cggcttgctg aagcgcgcac 901 ggcaagaggc gaggggcggc gactggtgag tacgccaaaa attttgacta gcggaggcta 961 gaaggagaga gatgggtgcg agagcgtcag tattaagcgg gggagaatta gatcgcgatg 1021 ggaaaaaatt cggttaaggc cagggggaaa gaaaaaatat aaattaaaac atatagtatg 1081 ggcaagcagg gagctagaac gattcgcagt taatcctggc ctgttagaaa catcagaagg 1141 ctgtagacaa atactgggac agctacaacc atcccttcag acaggatcag aagaacttag 1201 atcattatat aatacagtag caaccctcta ttgtgtgcat caaaggatag agataaaaga 1261 caccaaggaa gctttagaca agatagagga agagcaaaac aaaagtaaga ccaccgcaca 1321 gcaagcggcc gctgatcttc agacctggag gaggagatat gagggacaat tggagaagtg 1381 aattatataa atataaagta gtaaaaattg aaccattagg agtagcaccc accaaggcaa 1441 agagaagagt ggtgcagaga gaaaaaagag cagtgggaat aggagctttg ttccttgggt 1501 tcttgggagc agcaggaagc actatgggcg cagcgtcaat gacgctgacg gtacaggcca 1561 gacaattatt gtctggtata gtgcagcagc agaacaattt gctgagggct attgaggcgc 1621 aacagcatct gttgcaactc acagtctggg gcatcaagca gctccaggca agaatcctgg 1681 ctgtggaaag atacctaaag gatcaacagc tcctggggat ttggggttgc tctggaaaac 1741 tcatttgcac cactgctgtg ccttggaatg ctagttggag taataaatct ctggaacaga 1801 tttggaatca cacgacctgg atggagtggg acagagaaat taacaattac acaagcttaa 1861 tacactcctt aattgaagaa tcgcaaaacc agcaagaaaa gaatgaacaa gaattattgg 1921 aattagataa atgggcaagt ttgtggaatt ggtttaacat aacaaattgg ctgtggtata 1981 taaaattatt cataatgata gtaggaggct tggtaggttt aagaatagtt tttgctgtac 2041 tttctatagt gaatagagtt aggcagggat attcaccatt atcgtttcag acccacctcc 2101 caaccccgag gggacccgac aggcccgaag gaatagaaga agaaggtgga gagagagaca 2161 gagacagatc cattcgatta gtgaacggat ctcgacggta tcgatcacga gactagcctc 2221 gagcggccgc ccccttcacc gagggcctat ttcccatgat tccttcatat ttgcatatac 2281 gatacaaggc tgttagagag ataattggaa ttaatttgac tgtaaacaca aagatattag 2341 tacaaaatac gtgacgtaga aagtaataat ttcttgggta gtttgcagtt ttaaaattat 2401 gttttaaaat ggactatcat atgcttaccg taacttgaaa gtatttcgat ttcttggctt 2461 tatatatctt gtggaaagga cgaaacaccg gtgtcttcga ggcttactaa aagccagata 2521 acagtatgcg tatttgcgcg ctgatttttg cggtataaga atatatactg atatgtatac 2581 ccgaagtatg tcaaaaagag gtgtgctatg aagcagcgta ttacagtgac agttgacagc 2641 gacagctatc agttgctcaa ggcatatatg atgtcaatat ctccggtctg gtaagcacaa 2701 ccatgcagaa tgaagcccgt cgtctgcgtg ccgaacgctg gaaagcggaa aatcaggaag 2761 ggatggctga ggtcgcccgg tttattgaaa tgaacggctc ttttgctgac gagaacaggg 2821 actggtgaaa tgcagtttaa ggtttacacc tataaaagag agagccgtta tcgtctgttt 2881 gtggatgtac agagtgatat tattgacacg cccgggcgac ggatggtgat ccccctggcc 2941 agtgcacgtc tgctgtcaga taaagtctcc cgtgaacttt acccggtggt gcatatcggg 3001 gatgaaagct ggcgcatgat gaccaccgat atggccagtg tgccggtctc cgttatcggg 3061 gaagaagtgg ctgatctcag ccaccgcgaa aatgacatca aaaacgccat taacctgatg 3121 ttctggggaa tataaaccct gcaggacgaa gacccgtttg agagctaggg ccctgaagaa 3181 gggccctagc aagttcaaat aaggctagtc cgttatcaac ttggccaaca tgaggatcac 3241 ccatgtctgc agggccaagt ggcaccgagt cggtgcggag cagacgatat ggcgtcgctc 3301 ctttttttga attctcgacc tcgagacaaa tggcagtatt catccacaat tttaaaagaa 3361 aaggggggat tggggggtac agtgcagggg aaagaatagt agacataata gcaacagaca 3421 tacaaactaa agaattacaa aaacaaatta caaaaattca aaattttcgg gtttattaca 3481 gggacagcag agatccactt tggccgcggc tcgagggggt tggggttgcg ccttttccaa 3541 ggcagccctg ggtttgcgca gggacgcggc tgctctgggc gtggttccgg gaaacgcagc 3601 ggcgccgacc ctgggtctcg cacattcttc acgtccgttc gcagcgtcac ccggatcttc 3661 gccgctaccc ttgtgggccc cccggcgacg cttcctgctc cgcccctaag tcgggaaggt 3721 tccttgcggt tcgcggcgtg ccggacgtga caaacggaag ccgcacgtct cactagtacc 3781 ctcgcagacg gacagcgcca gggagcaatg gcagcgcgcc gaccgcgatg ggctgtggcc 3841 aatagcggct gctcagcagg gcgcgccgag agcagcggcc gggaaggggc ggtgcgggag 3901 gcggggtgtg gggcggtagt gtgggccctg ttcctgcccg cgcggtgttc cgcattctgc 3961 aagcctccgg agcgcacgtc ggcagtcggc tccctcgttg accgaatcac cgacctctct 4021 ccccaggggg atccaccgga tcaagcttgc cagctggggc gccctctggt aaggttggga 4081 agccctgcag atctgatccc ggggggcaat gagatatgaa aaagcctgaa ctcaccgcga 4141 cgtctgtcga gaagtttctg atcgaaaagt tcgacagcgt ctccgacctg atgcagctct 4201 cggagggcga agaatctcgt gctttcagct tcgatgtagg agggcgtgga tatgtcctgc 4261 gggtaaatag ctgcgccgat ggtttctaca aagatcgtta tgtttatcgg cactttgcat 4321 cggccgcgct cccgattccg gaagtgcttg acattgggga atttagcgag agcctgacct 4381 attgcatctc ccgccgtgca cagggtgtca cgttgcaaga tctgcctgaa accgaactgc 4441 ccgctgttct gcagccggtc gcggaggcca tggatgcgat cgctgcggcc gatcttagcc 4501 agacgagcgg gttcggccca ttcggaccgc aaggaatcgg tcaatacact acatggcgtg 4561 atttcatatg cgcgattgct gatccccatg tgtatcactg gcaaactgtg atggacgaca 4621 ccgtcagtgc gtccgtcgcg caggctctcg atgagctgat gctttgggcc gaggactgcc 4681 ccgaagtccg gcacctcgtg cacgcggatt tcggctccaa caatgtcctg acggacaatg 4741 gccgcataac agcggtcatt gactggagcg aggcgatgtt cggggattcc caatacgagg 4801 tcgccaacat cttcttctgg aggccgtggt tggcttgtat ggagcagcag acgcgctact 4861 tcgagcggag gcatccggag cttgcaggat cgccgcggct ccgggcgtat atgctccgca 4921 ttggtcttga ccaactctat cagagcttgg ttgacggcaa tttcgatgat gcagcttggg 4981 cgcagggtcg atgcgacgca atcgtccgat ccggagccgg gactgtcggg cgtacacaaa 5041 tcgcccgcag aagcgcggcc gtctggaccg atggctgtgt agaagtactc gccgatagtg 5101 gaaaccgacg ccccagcact cgtccgaggg caaaggaata gagtagatgc cgaccgggat 5161 ctatcgatac cgtcgacctc gagggggggc ccggtacctt taagaccaat gacttacaag 5221 gcagctgtag atcttagcca ctttttaaaa gaaaaggggg gactggaagg gctaattcac 5281 tcccaacgaa gaaaagatct gctttttgct tgtactgggt ctctctggtt agaccagatc 5341 tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg 5401 ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc 5461 ctcagaccct tttagtcagt gtggaaaatc tctagcagta gtagttcatg tcatcttatt 5521 attcagtatt tataacttgc aaagaaatga atatcagaga gtgagaggaa cttgtttatt 5581 gcagcttata atggttacaa ataaagcaat agcatcacaa atttcacaaa taaagcattt 5641 ttttcactgc attctagttg tggtttgtcc aaactcatca atgtatctta tcatgtctgg 5701 ctctagctat cccgccccta actccgccca tcccgcccct aactccgccc agttccgccc 5761 attctccgcc ccatggctga ctaatttttt ttatttatgc agaggccgag gccgcctcgg 5821 cctctgagct attccagaag tagtgaggag gcttttttgg aggcctaggg acgtacccaa 5881 ttcgccctat agtgagtcgt attacgcgcg ctcactggcc gtcgttttac aacgtcgtga 5941 ctgggaaaac cctggcgtta cccaacttaa tcgccttgca gcacatcccc ctttcgccag 6001 ctggcgtaat agcgaagagg cccgcaccga tcgcccttcc caacagttgc gcagcctgaa 6061 tggcgaatgg gacgcgccct gtagcggcgc attaagcgcg gcgggtgtgg tggttacgcg 6121 cagcgtgacc gctacacttg ccagcgccct agcgcccgct cctttcgctt tcttcccttc 6181 ctttctcgcc acgttcgccg gctttccccg tcaagctcta aatcgggggc tccctttagg 6241 gttccgattt agtgctttac ggcacctcga ccccaaaaaa cttgattagg gtgatggttc 6301 acgtagtggg ccatcgccct gatagacggt ttttcgccct ttgacgttgg agtccacgtt 6361 ctttaatagt ggactcttgt tccaaactgg aacaacactc aaccctatct cggtctattc 6421 ttttgattta taagggattt tgccgatttc ggcctattgg ttaaaaaatg agctgattta 6481 acaaaaattt aacgcgaatt ttaacaaaat attaacgctt acaatttagg tggcactttt 6541 cggggaaatg tgcgcggaac ccctatttgt ttatttttct aaatacattc aaatatgtat 6601 ccgctcatga gacaataacc ctgataaatg cttcaataat attgaaaaag gaagagtatg 6661 agtattcaac atttccgtgt cgcccttatt cccttttttg cggcattttg ccttcctgtt 6721 tttgctcacc cagaaacgct ggtgaaagta aaagatgctg aagatcagtt gggtgcacga 6781 gtgggttaca tcgaactgga tctcaacagc ggtaagatcc ttgagagttt tcgccccgaa 6841 gaacgttttc caatgatgag cacttttaaa gttctgctat gtggcgcggt attatcccgt 6901 attgacgccg ggcaagagca actcggtcgc cgcatacact attctcagaa tgacttggtt 6961 gagtactcac cagtcacaga aaagcatctt acggatggca tgacagtaag agaattatgc 7021 agtgctgcca taaccatgag tgataacact gcggccaact tacttctgac aacgatcgga 7081 ggaccgaagg agctaaccgc ttttttgcac aacatggggg atcatgtaac tcgccttgat 7141 cgttgggaac cggagctgaa tgaagccata ccaaacgacg agcgtgacac cacgatgcct 7201 gtagcaatgg caacaacgtt gcgcaaacta ttaactggcg aactacttac tctagcttcc 7261 cggcaacaat taatagactg gatggaggcg gataaagttg caggaccact tctgcgctcg 7321 gcccttccgg ctggctggtt tattgctgat aaatctggag ccggtgagcg tgggtctcgc 7381 ggtatcattg cagcactggg gccagatggt aagccctccc gtatcgtagt tatctacacg 7441 acggggagtc aggcaactat ggatgaacga aatagacaga tcgctgagat aggtgcctca 7501 ctgattaagc attggtaact gtcagaccaa gtttactcat atatacttta gattgattta 7561 aaacttcatt tttaatttaa aaggatctag gtgaagatcc tttttgataa tctcatgacc 7621 aaaatccctt aacgtgagtt ttcgttccac tgagcgtcag accccgtaga aaagatcaaa 7681 ggatcttctt gagatccttt ttttctgcgc gtaatctgct gcttgcaaac aaaaaaacca 7741 ccgctaccag cggtggtttg tttgccggat caagagctac caactctttt tccgaaggta 7801 actggcttca gcagagcgca gataccaaat actgttcttc tagtgtagcc gtagttaggc 7861 caccacttca agaactctgt agcaccgcct acatacctcg ctctgctaat cctgttacca 7921 gtggctgctg ccagtggcga taagtcgtgt cttaccgggt tggactcaag acgatagtta 7981 ccggataagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc cagcttggag 8041 cgaacgacct acaccgaact gagataccta cagcgtgagc tatgagaaag cgccacgctt 8101 cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac aggagagcgc 8161 acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac 8221 ctctgacttg agcgtcgatt tttgtgatgc tcgtcagggg ggcggagcct atggaaaaac 8281 gccagcaacg cggccttttt acggttcctg gccttttgct ggccttttgc tcacatg //