质粒名称: | pLH-sgRNA1 |
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出品公司: | Addgene |
目录编号: | 75388 |
存储实验室: | Thoru Pederson |
载体骨架基本信息 |
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载体名称: | pLKO.1 |
载体抗性: | 氨苄青霉素 |
空载体大小: | 8000 bp |
完整质粒大小: | 8267 bp |
载体类型: | 哺乳动物表达,慢病毒,CRISPR |
筛选标记: | 潮霉素 |
高拷贝/低拷贝: | 高拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | sgRNA1 |
物种来源: | 合成 |
插入大小: | 76 bp |
启动子 | U6 |
克隆方法: | 限制性内切酶 |
5' 克隆位点: | Sbf I(未破坏) |
3' 克隆位点: | EcoR I(未破坏) |
5' 测序引物 | cccttcaccgagggcctatttccc |
3' 测序引物 | CTATTCTTTCCCCTGCACTGTACCC |
文献引用方法 |
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材料和方法部分: | pLH-sgRNA1 was a gift from Thoru Pederson (Addgene plasmid # 75388 ; http://n2t.net/addgene:75388 ; RRID:Addgene_75388) |
参考文献部分: | Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T. Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. 10.1038/nbt.3526 PubMed 27088723 |
买家导航
pLHsgRNA1载体基本信息
pLHsgRNA1载体图谱质粒图谱和多克隆位点信息
pLHsgRNA1载体简介
pLHsgRNA1载体序列
LOCUS pLH-sgRNA1 8267 bp ds-DNA circular SYN 06-AUG-2018 DEFINITION sgRNA1. ACCESSION . VERSION . KEYWORDS pLH-sgRNA1 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8267) AUTHORS Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T TITLE Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. JOURNAL Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. PUBMED 27088723 REFERENCE 2 (bases 1 to 8267) AUTHORS . TITLE Direct Submission JOURNAL Exported Aug 6, 2018 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..8267 /organism="synthetic DNA construct" /mol_type="other DNA" protein_bind 51..72 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." promoter 87..117 /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 125..141 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." primer_bind 130..152 /label=M13/pUC Reverse /note="In lacZ gene" primer_bind 149..165 /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind 149..165 /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind 184..204 /label=T3 /note="T3 promoter, forward primer" promoter 186..204 /label=T3 promoter /note="promoter for bacteriophage T3 RNA polymerase" promoter 232..458 /label=RSV promoter /note="Rous sarcoma virus enhancer/promoter" LTR 459..639 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" misc_feature 686..811 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" misc_feature 1304..1537 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." promoter 2064..2304 /label=U6 promoter /note="RNA polymerase III promoter for human U6 snRNA" primer_bind 2064..2084 /label=hU6-F /note="Human U6 promoter, forward primer" primer_bind 2235..2254 /label=LKO.1 5' /note="Human U6 promoter, forward primer" CDS 2653..2958 /codon_start=1 /gene="ccdB" /product="CcdB, a bacterial toxin that poisons DNA gyrase" /label=ccdB /note="Plasmids containing the ccdB gene cannot be propagated in standard E. coli strains." /translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI" primer_bind 2837..2856 /label=ccdB-fwd /note="ccdB gene, forward primer" misc_RNA 2979..3054 /label=gRNA scaffold /note="guide RNA scaffold for the Streptococcus pyogenes CRISPR/Cas9 system" misc_feature 3103..3220 /label=cPPT/CTS /note="central polypurine tract and central termination sequence of HIV-1" promoter 3269..3779 /label=hPGK promoter /note="human phosphoglycerate kinase 1 promoter" primer_bind 3698..3716 /label=hPGK-F /note="Human PGK promoter, forward primer" CDS 3869..4894 /codon_start=1 /gene="aph(4)-Ia" /product="aminoglycoside phosphotransferase from E. coli" /label=HygR /note="confers resistance to hygromycin" /translation="MKKPELTATSVEKFLIEKFDSVSDLMQLSEGEESRAFSFDVGGRG YVLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQDLP ETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQ TVMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF GDSQYEVANIFFWRPWLACMEQQTRYFERRHPELAGSPRLRAYMLRIGLDQLYQSLVDG NFDDAAWAQGRCDAIVRSGAGTVGRTQIARRSAAVWTDGCVEVLADSGNRRPSTRPRAK E" primer_bind complement(4918..4934) /label=KS primer /note="common sequencing primer, one of multiple similar variants" primer_bind complement(4919..4935) /label=pBluescriptKS /note="For pBluescript vector" LTR 5017..5250 /label=3' LTR (Delta-U3) /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" polyA_signal 5322..5443 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(5359..5378) /label=SV40pA-R /note="SV40 polyA, reverse primer" primer_bind 5413..5432 /label=EBV-rev /note="SV40 polyA terminator, reverse primer" rep_origin 5483..5618 /label=SV40 ori /note="SV40 origin of replication" primer_bind 5545..5564 /label=SV40pro-F /note="SV40 promoter/origin, forward primer" primer_bind complement(5638..5657) /label=T7 /note="T7 promoter, forward primer" promoter complement(5639..5657) /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" primer_bind complement(5667..5684) /label=M13 Forward /note="In lacZ gene. Also called M13-F20 or M13 (-21) Forward" primer_bind complement(5667..5683) /label=M13 fwd /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5676..5698) /label=M13/pUC Forward /note="In lacZ gene" rep_origin 5825..6280 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(5912..5931) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 6122..6143 /label=F1ori-F /note="F1 origin, forward primer" promoter 6306..6410 /gene="bla" /label=AmpR promoter CDS 6411..7271 /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind complement(6629..6648) /label=Amp-R /note="Ampicillin resistance gene, reverse primer" rep_origin 7442..8030 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind 7931..7950 /label=pBR322ori-F /note="pBR322 origin, forward primer" primer_bind 8184..8201 /label=L4440 /note="L4440 vector, forward primer" ORIGIN 1 tggcacgaca ggtttcccga ctggaaagcg ggcagtgagc gcaacgcaat taatgtgagt 61 tagctcactc attaggcacc ccaggcttta cactttatgc ttccggctcg tatgttgtgt 121 ggaattgtga gcggataaca atttcacaca ggaaacagct atgaccatga ttacgccaag 181 cgcgcaatta accctcacta aagggaacaa aagctggagc tgcaagctta atgtagtctt 241 atgcaatact cttgtagtct tgcaacatgg taacgatgag ttagcaacat gccttacaag 301 gagagaaaaa gcaccgtgca tgccgattgg tggaagtaag gtggtacgat cgtgccttat 361 taggaaggca acagacgggt ctgacatgga ttggacgaac cactgaattg ccgcattgca 421 gagatattgt atttaagtgc ctagctcgat acataaacgg gtctctctgg ttagaccaga 481 tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct 541 tgccttgagt gcttcaagta gtgtgtgccc gtctgttgtg tgactctggt aactagagat 601 ccctcagacc cttttagtca gtgtggaaaa tctctagcag tggcgcccga acagggactt 661 gaaagcgaaa gggaaaccag aggagctctc tcgacgcagg actcggcttg ctgaagcgcg 721 cacggcaaga ggcgaggggc ggcgactggt gagtacgcca aaaattttga ctagcggagg 781 ctagaaggag agagatgggt gcgagagcgt cagtattaag cgggggagaa ttagatcgcg 841 atgggaaaaa attcggttaa ggccaggggg aaagaaaaaa tataaattaa aacatatagt 901 atgggcaagc agggagctag aacgattcgc agttaatcct ggcctgttag aaacatcaga 961 aggctgtaga caaatactgg gacagctaca accatccctt cagacaggat cagaagaact 1021 tagatcatta tataatacag tagcaaccct ctattgtgtg catcaaagga tagagataaa 1081 agacaccaag gaagctttag acaagataga ggaagagcaa aacaaaagta agaccaccgc 1141 acagcaagcg gccgctgatc ttcagacctg gaggaggaga tatgagggac aattggagaa 1201 gtgaattata taaatataaa gtagtaaaaa ttgaaccatt aggagtagca cccaccaagg 1261 caaagagaag agtggtgcag agagaaaaaa gagcagtggg aataggagct ttgttccttg 1321 ggttcttggg agcagcagga agcactatgg gcgcagcgtc aatgacgctg acggtacagg 1381 ccagacaatt attgtctggt atagtgcagc agcagaacaa tttgctgagg gctattgagg 1441 cgcaacagca tctgttgcaa ctcacagtct ggggcatcaa gcagctccag gcaagaatcc 1501 tggctgtgga aagataccta aaggatcaac agctcctggg gatttggggt tgctctggaa 1561 aactcatttg caccactgct gtgccttgga atgctagttg gagtaataaa tctctggaac 1621 agatttggaa tcacacgacc tggatggagt gggacagaga aattaacaat tacacaagct 1681 taatacactc cttaattgaa gaatcgcaaa accagcaaga aaagaatgaa caagaattat 1741 tggaattaga taaatgggca agtttgtgga attggtttaa cataacaaat tggctgtggt 1801 atataaaatt attcataatg atagtaggag gcttggtagg tttaagaata gtttttgctg 1861 tactttctat agtgaataga gttaggcagg gatattcacc attatcgttt cagacccacc 1921 tcccaacccc gaggggaccc gacaggcccg aaggaataga agaagaaggt ggagagagag 1981 acagagacag atccattcga ttagtgaacg gatctcgacg gtatcgatca cgagactagc 2041 ctcgagcggc cgcccccttc accgagggcc tatttcccat gattccttca tatttgcata 2101 tacgatacaa ggctgttaga gagataattg gaattaattt gactgtaaac acaaagatat 2161 tagtacaaaa tacgtgacgt agaaagtaat aatttcttgg gtagtttgca gttttaaaat 2221 tatgttttaa aatggactat catatgctta ccgtaacttg aaagtatttc gatttcttgg 2281 ctttatatat cttgtggaaa ggacgaaaca ccggtgtctt cgaggcttac taaaagccag 2341 ataacagtat gcgtatttgc gcgctgattt ttgcggtata agaatatata ctgatatgta 2401 tacccgaagt atgtcaaaaa gaggtgtgct atgaagcagc gtattacagt gacagttgac 2461 agcgacagct atcagttgct caaggcatat atgatgtcaa tatctccggt ctggtaagca 2521 caaccatgca gaatgaagcc cgtcgtctgc gtgccgaacg ctggaaagcg gaaaatcagg 2581 aagggatggc tgaggtcgcc cggtttattg aaatgaacgg ctcttttgct gacgagaaca 2641 gggactggtg aaatgcagtt taaggtttac acctataaaa gagagagccg ttatcgtctg 2701 tttgtggatg tacagagtga tattattgac acgcccgggc gacggatggt gatccccctg 2761 gccagtgcac gtctgctgtc agataaagtc tcccgtgaac tttacccggt ggtgcatatc 2821 ggggatgaaa gctggcgcat gatgaccacc gatatggcca gtgtgccggt ctccgttatc 2881 ggggaagaag tggctgatct cagccaccgc gaaaatgaca tcaaaaacgc cattaacctg 2941 atgttctggg gaatataaac cctgcaggac gaagacccgt ttgagagcta gaaatagcaa 3001 gttcaaataa ggctagtccg ttatcaactt gaaaaagtgg caccgagtcg gtgctttttt 3061 tgaattctcg acctcgagac aaatggcagt attcatccac aattttaaaa gaaaaggggg 3121 gattgggggg tacagtgcag gggaaagaat agtagacata atagcaacag acatacaaac 3181 taaagaatta caaaaacaaa ttacaaaaat tcaaaatttt cgggtttatt acagggacag 3241 cagagatcca ctttggccgc ggctcgaggg ggttggggtt gcgccttttc caaggcagcc 3301 ctgggtttgc gcagggacgc ggctgctctg ggcgtggttc cgggaaacgc agcggcgccg 3361 accctgggtc tcgcacattc ttcacgtccg ttcgcagcgt cacccggatc ttcgccgcta 3421 cccttgtggg ccccccggcg acgcttcctg ctccgcccct aagtcgggaa ggttccttgc 3481 ggttcgcggc gtgccggacg tgacaaacgg aagccgcacg tctcactagt accctcgcag 3541 acggacagcg ccagggagca atggcagcgc gccgaccgcg atgggctgtg gccaatagcg 3601 gctgctcagc agggcgcgcc gagagcagcg gccgggaagg ggcggtgcgg gaggcggggt 3661 gtggggcggt agtgtgggcc ctgttcctgc ccgcgcggtg ttccgcattc tgcaagcctc 3721 cggagcgcac gtcggcagtc ggctccctcg ttgaccgaat caccgacctc tctccccagg 3781 gggatccacc ggatcaagct tgccagctgg ggcgccctct ggtaaggttg ggaagccctg 3841 cagatctgat cccggggggc aatgagatat gaaaaagcct gaactcaccg cgacgtctgt 3901 cgagaagttt ctgatcgaaa agttcgacag cgtctccgac ctgatgcagc tctcggaggg 3961 cgaagaatct cgtgctttca gcttcgatgt aggagggcgt ggatatgtcc tgcgggtaaa 4021 tagctgcgcc gatggtttct acaaagatcg ttatgtttat cggcactttg catcggccgc 4081 gctcccgatt ccggaagtgc ttgacattgg ggaatttagc gagagcctga cctattgcat 4141 ctcccgccgt gcacagggtg tcacgttgca agatctgcct gaaaccgaac tgcccgctgt 4201 tctgcagccg gtcgcggagg ccatggatgc gatcgctgcg gccgatctta gccagacgag 4261 cgggttcggc ccattcggac cgcaaggaat cggtcaatac actacatggc gtgatttcat 4321 atgcgcgatt gctgatcccc atgtgtatca ctggcaaact gtgatggacg acaccgtcag 4381 tgcgtccgtc gcgcaggctc tcgatgagct gatgctttgg gccgaggact gccccgaagt 4441 ccggcacctc gtgcacgcgg atttcggctc caacaatgtc ctgacggaca atggccgcat 4501 aacagcggtc attgactgga gcgaggcgat gttcggggat tcccaatacg aggtcgccaa 4561 catcttcttc tggaggccgt ggttggcttg tatggagcag cagacgcgct acttcgagcg 4621 gaggcatccg gagcttgcag gatcgccgcg gctccgggcg tatatgctcc gcattggtct 4681 tgaccaactc tatcagagct tggttgacgg caatttcgat gatgcagctt gggcgcaggg 4741 tcgatgcgac gcaatcgtcc gatccggagc cgggactgtc gggcgtacac aaatcgcccg 4801 cagaagcgcg gccgtctgga ccgatggctg tgtagaagta ctcgccgata gtggaaaccg 4861 acgccccagc actcgtccga gggcaaagga atagagtaga tgccgaccgg gatctatcga 4921 taccgtcgac ctcgaggggg ggcccggtac ctttaagacc aatgacttac aaggcagctg 4981 tagatcttag ccacttttta aaagaaaagg ggggactgga agggctaatt cactcccaac 5041 gaagaaaaga tctgcttttt gcttgtactg ggtctctctg gttagaccag atctgagcct 5101 gggagctctc tggctaacta gggaacccac tgcttaagcc tcaataaagc ttgccttgag 5161 tgcttcaagt agtgtgtgcc cgtctgttgt gtgactctgg taactagaga tccctcagac 5221 ccttttagtc agtgtggaaa atctctagca gtagtagttc atgtcatctt attattcagt 5281 atttataact tgcaaagaaa tgaatatcag agagtgagag gaacttgttt attgcagctt 5341 ataatggtta caaataaagc aatagcatca caaatttcac aaataaagca tttttttcac 5401 tgcattctag ttgtggtttg tccaaactca tcaatgtatc ttatcatgtc tggctctagc 5461 tatcccgccc ctaactccgc ccatcccgcc cctaactccg cccagttccg cccattctcc 5521 gccccatggc tgactaattt tttttattta tgcagaggcc gaggccgcct cggcctctga 5581 gctattccag aagtagtgag gaggcttttt tggaggccta gggacgtacc caattcgccc 5641 tatagtgagt cgtattacgc gcgctcactg gccgtcgttt tacaacgtcg tgactgggaa 5701 aaccctggcg ttacccaact taatcgcctt gcagcacatc cccctttcgc cagctggcgt 5761 aatagcgaag aggcccgcac cgatcgccct tcccaacagt tgcgcagcct gaatggcgaa 5821 tgggacgcgc cctgtagcgg cgcattaagc gcggcgggtg tggtggttac gcgcagcgtg 5881 accgctacac ttgccagcgc cctagcgccc gctcctttcg ctttcttccc ttcctttctc 5941 gccacgttcg ccggctttcc ccgtcaagct ctaaatcggg ggctcccttt agggttccga 6001 tttagtgctt tacggcacct cgaccccaaa aaacttgatt agggtgatgg ttcacgtagt 6061 gggccatcgc cctgatagac ggtttttcgc cctttgacgt tggagtccac gttctttaat 6121 agtggactct tgttccaaac tggaacaaca ctcaacccta tctcggtcta ttcttttgat 6181 ttataaggga ttttgccgat ttcggcctat tggttaaaaa atgagctgat ttaacaaaaa 6241 tttaacgcga attttaacaa aatattaacg cttacaattt aggtggcact tttcggggaa 6301 atgtgcgcgg aacccctatt tgtttatttt tctaaataca ttcaaatatg tatccgctca 6361 tgagacaata accctgataa atgcttcaat aatattgaaa aaggaagagt atgagtattc 6421 aacatttccg tgtcgccctt attccctttt ttgcggcatt ttgccttcct gtttttgctc 6481 acccagaaac gctggtgaaa gtaaaagatg ctgaagatca gttgggtgca cgagtgggtt 6541 acatcgaact ggatctcaac agcggtaaga tccttgagag ttttcgcccc gaagaacgtt 6601 ttccaatgat gagcactttt aaagttctgc tatgtggcgc ggtattatcc cgtattgacg 6661 ccgggcaaga gcaactcggt cgccgcatac actattctca gaatgacttg gttgagtact 6721 caccagtcac agaaaagcat cttacggatg gcatgacagt aagagaatta tgcagtgctg 6781 ccataaccat gagtgataac actgcggcca acttacttct gacaacgatc ggaggaccga 6841 aggagctaac cgcttttttg cacaacatgg gggatcatgt aactcgcctt gatcgttggg 6901 aaccggagct gaatgaagcc ataccaaacg acgagcgtga caccacgatg cctgtagcaa 6961 tggcaacaac gttgcgcaaa ctattaactg gcgaactact tactctagct tcccggcaac 7021 aattaataga ctggatggag gcggataaag ttgcaggacc acttctgcgc tcggcccttc 7081 cggctggctg gtttattgct gataaatctg gagccggtga gcgtgggtct cgcggtatca 7141 ttgcagcact ggggccagat ggtaagccct cccgtatcgt agttatctac acgacgggga 7201 gtcaggcaac tatggatgaa cgaaatagac agatcgctga gataggtgcc tcactgatta 7261 agcattggta actgtcagac caagtttact catatatact ttagattgat ttaaaacttc 7321 atttttaatt taaaaggatc taggtgaaga tcctttttga taatctcatg accaaaatcc 7381 cttaacgtga gttttcgttc cactgagcgt cagaccccgt agaaaagatc aaaggatctt 7441 cttgagatcc tttttttctg cgcgtaatct gctgcttgca aacaaaaaaa ccaccgctac 7501 cagcggtggt ttgtttgccg gatcaagagc taccaactct ttttccgaag gtaactggct 7561 tcagcagagc gcagatacca aatactgttc ttctagtgta gccgtagtta ggccaccact 7621 tcaagaactc tgtagcaccg cctacatacc tcgctctgct aatcctgtta ccagtggctg 7681 ctgccagtgg cgataagtcg tgtcttaccg ggttggactc aagacgatag ttaccggata 7741 aggcgcagcg gtcgggctga acggggggtt cgtgcacaca gcccagcttg gagcgaacga 7801 cctacaccga actgagatac ctacagcgtg agctatgaga aagcgccacg cttcccgaag 7861 ggagaaaggc ggacaggtat ccggtaagcg gcagggtcgg aacaggagag cgcacgaggg 7921 agcttccagg gggaaacgcc tggtatcttt atagtcctgt cgggtttcgc cacctctgac 7981 ttgagcgtcg atttttgtga tgctcgtcag gggggcggag cctatggaaa aacgccagca 8041 acgcggcctt tttacggttc ctggcctttt gctggccttt tgctcacatg ttctttcctg 8101 cgttatcccc tgattctgtg gataaccgta ttaccgcctt tgagtgagct gataccgctc 8161 gccgcagccg aacgaccgag cgcagcgagt cagtgagcga ggaagcggaa gagcgcccaa 8221 tacgcaaacc gcctctcccc gcgcgttggc cgattcatta atgcagc //