质粒名称: | ubc-nls-ha-MCP-VenusN-nls-ha-PCP-VenusC |
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出品公司: | addgene |
目录编号: | 52985 |
存储实验室: | Robert Singer |
载体骨架基本信息 |
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载体名称: | phage |
空载体大小: | 6200 bp |
完整质粒大小: | 8523 bp |
载体类型: | Lentiviral |
载体抗性: | 氨苄霉素 |
生长温度: | 37 ℃ |
宿主菌: | Stbl3 |
拷贝数: | 高拷贝 |
插入基因信息 |
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插入基因名称: | ls-ha-MCP-VenusN-nls-ha-PCP-VenusC |
物种来源: | Synthetic |
插入大小: | 2252 bp |
启动子: | ubc |
克隆方法: | 限制性内切酶 |
5’克隆位点: | NotI(未破坏) |
3’克隆位点: | ClaI (未破坏) |
5’测序引物 | ubc (5'-CGC CGA TGA TTA TAT AAG GA-3') |
3’测序引物 | WPRE-R |
文献引用方法 |
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材料和方法部分: | ubc-nls-ha-MCP-VenusN-nls-ha-PCP-VenusC was a gift from Robert Singer (Addgene plasmid # 52985 ; http://n2t.net/addgene:52985 ; RRID:Addgene_52985) |
参考文献部分: | Background free imaging of single mRNAs in live cells using split fluorescent proteins. Wu B, Chen J, Singer RH. Sci Rep. 2014 Jan 9;4:3615. doi: 10.1038/srep03615. 10.1038/srep03615 PubMed 24402470 |
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载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS ubc-nls-ha-MCP-VenusN-nls-ha-PCP-VenusC 8523 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION split Venus attached to MCP and PCP respectively. ACCESSION . VERSION . KEYWORDS ubc-nls-ha-MCP-VenusN-nls-ha-PCP-VenusC SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8523) AUTHORS Wu B, Chen J, Singer RH TITLE Background free imaging of single mRNAs in live cells using split fluorescent proteins. JOURNAL Sci Rep. 2014 Jan 9;4:3615. doi: 10.1038/srep03615. PUBMED 24402470 REFERENCE 2 (bases 1 to 8523) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.biofeng.com FEATURES Location/Qualifiers source 1..8523 /organism="synthetic DNA construct" /mol_type="other DNA" primer_bind 82..101 /label=SV40pro-F /note="SV40 promoter/origin, forward primer" protein_bind 230..251 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." promoter 266..296 /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 304..320 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." primer_bind 309..331 /label=M13/pUC Reverse /note="In lacZ gene" primer_bind 328..344 /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind 328..344 /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind 394..413 /label=EBV-rev /note="SV40 polyA terminator, reverse primer" LTR 605..1238 /label=3' LTR /note="3' long terminal repeat (LTR) from HIV-1" misc_feature 1285..1410 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" misc_feature 1907..2140 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." CDS 2325..2369 /codon_start=1 /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /label=gp41 peptide /note="recognized by the 2H10 single-chain llama nanobody" /translation="KNEQELLELDKWASL" misc_feature 2662..2779 /label=cPPT/CTS /note="central polypurine tract and central termination sequence of HIV-1" promoter 2822..3220 /label=UbC promoter /note="human ubiquitin C promoter" regulatory 3223..3232 /regulatory_class="other" /note="vertebrate consensus sequence for strong initiation of translation (Kozak, 1987)" CDS 3235..3255 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS 3259..3285 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /label=HA /translation="YPYDVPDYA" CDS 3286..3297 /codon_start=1 /product="Factor Xa recognition and cleavage site" /label=Factor Xa site /translation="IEGR" regulatory 3694..3703 /regulatory_class="other" /note="vertebrate consensus sequence for strong initiation of translation (Kozak, 1987)" CDS 3700..4161 /codon_start=1 /product="improved N-terminal fragment of mVenus for use in bimolecular fluorescence complementation (BiFC) (Kodama and Hu, 2010)" /label=VN155(I152L) /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL KLICTTGKLPVPWPTLVTTLGYGLQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDD GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIT" primer_bind complement(3745..3766) /label=EGFP-N /note="EGFP, reverse primer" primer_bind complement(4006..4025) /label=EXFP-R /note="For distinguishing EGFP variants, reverse primer" misc_feature 4174..4741 /label=IRES /note="internal ribosome entry site (IRES) of the encephalomyocarditis virus (EMCV)" misc_feature 4191..4743 /label=IRES /note="internal ribosome entry site (IRES) of the encephalomyocarditis virus (EMCV)" primer_bind complement(4335..4352) /label=IRES reverse /note="IRES internal ribosome entry site, reverse primer. Also called pCDH-rev" primer_bind 4562..4581 /label=IRES-F /note="IRES internal ribosome entry site, forward primer" CDS 4767..4787 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" CDS 4791..4817 /codon_start=1 /product="HA (human influenza hemagglutinin) epitope tag" /label=HA /translation="YPYDVPDYA" CDS 4818..4829 /codon_start=1 /product="Factor Xa recognition and cleavage site" /label=Factor Xa site /translation="IEGR" CDS 5226..5477 /codon_start=1 /product="C-terminal fragment of mVenus for use in bimolecular fluorescence complementation (BiFC) (Kodama and Hu, 2010)" /label=VC155 /translation="DKQKNGIKANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNH YLSYQSALSKDPNEKRDHMVLLEFVTAAGITLGMDELYK" primer_bind 5414..5435 /label=EGFP-C /note="EGFP, forward primer" misc_feature 5517..6105 /label=WPRE /note="woodchuck hepatitis virus posttranscriptional regulatory element" primer_bind complement(5570..5590) /label=WPRE-R /note="WPRE, reverse primer" CDS complement(5988..5999) /codon_start=1 /product="Factor Xa recognition and cleavage site" /label=Factor Xa site /translation="IEGR" LTR 6180..6413 /label=3' LTR (Delta-U3) /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" primer_bind complement(6532..6550) /label=pBRforEco /note="pBR322 vectors, upsteam of EcoRI site, forward primer" promoter 6618..6722 /gene="bla" /label=AmpR promoter CDS 6723..7583 /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind complement(6941..6960) /label=Amp-R /note="Ampicillin resistance gene, reverse primer" rep_origin 7754..8342 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind 8243..8262 /label=pBR322ori-F /note="pBR322 origin, forward primer" primer_bind 8496..8513 /label=L4440 /note="L4440 vector, forward primer" ORIGIN 1 agcgcccaat acgcaaaccg cctctccccg cgcgttggcc gattcattaa tgcagcaagc 61 tcatggctga ctaatttttt ttatttatgc agaggccgag gccgcctcgg cctctgagct 121 attccagaag tagtgaggag gcttttttgg aggcctaggc ttttgcaaaa agctccccgt 181 ggcacgacag gtttcccgac tggaaagcgg gcagtgagcg caacgcaatt aatgtgagtt 241 agctcactca ttaggcaccc caggctttac actttatgct tccggctcgt atgttgtgtg 301 gaattgtgag cggataacaa tttcacacag gaaacagcta tgacatgatt acgaatttca 361 caaataaagc atttttttca ctgcattcta gttgtggttt gtccaaactc atcaatgtat 421 cttatcatgt ctggatcaac tggataactc aagctaacca aaatcatccc aaacttccca 481 ccccataccc tattaccact gccaattacc tgtggtttca tttactctaa acctgtgatt 541 cctctgaatt attttcattt taaagaaatt gtatttgtta aatatgtact acaaacttag 601 tagttggaag ggctaattca ctcccaaaga agacaagata tccttgatct gtggatctac 661 cacacacaag gctacttccc tgattagcag aactacacac cagggccagg ggtcagatat 721 ccactgacct ttggatggtg ctacaagcta gtaccagttg agccagataa ggtagaagag 781 gccaataaag gagagaacac cagcttgtta caccctgtga gcctgcatgg gatggatgac 841 ccggagagag aagtgttaga gtggaggttt gacagccgcc tagcatttca tcacgtggcc 901 cgagagctgc atccggagta cttcaagaac tgctgatatc gagcttgcta caagggactt 961 tccgctgggg actttccagg gaggcgtggc ctgggcggga ctggggagtg gcgagccctc 1021 agatcctgca tataagcagc tgctttttgc ctgtactggg tctctctggt tagaccagat 1081 ctgagcctgg gagctctctg gctaactagg gaacccactg cttaagcctc aataaagctt 1141 gccttgagtg cttcaagtag tgtgtgcccg tctgttgtgt gactctggta actagagatc 1201 cctcagaccc ttttagtcag tgtggaaaat ctctagcagt ggcgcccgaa cagggacttg 1261 aaagcgaaag ggaaaccaga ggagctctct cgacgcagga ctcggcttgc tgaagcgcgc 1321 acggcaagag gcgaggggcg gcgactggtg agtacgccaa aaattttgac tagcggaggc 1381 tagaaggaga gagatgggtg cgagagcgtc agtattaagc gggggagaat tagatcgcga 1441 tgggaaaaaa ttcggttaag gccaggggga aagaaaaaat ataaattaaa acatatagta 1501 tgggcaagca gggagctaga acgattcgca gttaatcctg gcctgttaga aacatcagaa 1561 ggctgtagac aaatactggg acagctacaa ccatcccttc agacaggatc agaagaactt 1621 agatcattat ataatacagt agcaaccctc tattgtgtgc atcaaaggat agagataaaa 1681 gacaccaagg aagctttaga caagatagag gaagagcaaa acaaaagtaa gaccaccgca 1741 cagcaagcgg ccggccgctg atcttcagac ctggaggagg agatatgagg gacaattgga 1801 gaagtgaatt atataaatat aaagtagtaa aaattgaacc attaggagta gcacccacca 1861 aggcaaagag aagagtggtg cagagagaaa aaagagcagt gggaatagga gctttgttcc 1921 ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcaatgacg ctgacggtac 1981 aggccagaca attattgtct ggtatagtgc agcagcagaa caatttgctg agggctattg 2041 aggcgcaaca gcatctgttg caactcacag tctggggcat caagcagctc caggcaagaa 2101 tcctggctgt ggaaagatac ctaaaggatc aacagctcct ggggatttgg ggttgctctg 2161 gaaaactcat ttgcaccact gctgtgcctt ggaatgctag ttggagtaat aaatctctgg 2221 aacagatttg gaatcacacg acctggatgg agtgggacag agaaattaac aattacacaa 2281 gcttaataca ctccttaatt gaagaatcgc aaaaccagca agaaaagaat gaacaagaat 2341 tattggaatt agataaatgg gcaagtttgt ggaattggtt taacataaca aattggctgt 2401 ggtatataaa attattcata atgatagtag gaggcttggt aggtttaaga atagtttttg 2461 ctgtactttc tatagtgaat agagttaggc agggatattc accattatcg tttcagaccc 2521 acctcccaac cccgagggga cccgacaggc ccgaaggaat agaagaagaa ggtggagaga 2581 gagacagaga cagatccatt cgattagtga acggatctcg acggtatcgc cgaattcaca 2641 aatggcagta ttcatccaca attttaaaag aaaagggggg attggggggt acagtgcagg 2701 ggaaagaata gtagacataa tagcaacaga catacaaact aaagaattac aaaaacaaat 2761 tacaaaaatt caaaattttc gggtttatta cagggacagc agagatccag tttggactag 2821 tggcctccgc gccgggtttt ggcgcctccc gcgggcgccc ccctcctcac ggcgagcgct 2881 gccacgtcag acgaagggcg cagcgagcgt cctgatcctt ccgcccggac gctcaggaca 2941 gcggcccgct gctcataaga ctcggcctta gaaccccagt atcagcagaa ggacatttta 3001 ggacgggact tgggtgactc tagggcactg gttttctttc cagagagcgg aacaggcgag 3061 gaaaagtagt cccttctcgg cgattctgcg gagggatctc cgtggggcgg tgaacgccga 3121 tgattatata aggacgcgcc gggtgtggca cagctagttc cgtcgcagcc gggatttggg 3181 tcgcggttct tgtttgtgga tcgctgtgat cgtcacttgg cggccgccat gggcccaaaa 3241 aagaaaagaa aagttggcta cccctacgac gtgcccgact acgccatcga aggccgccat 3301 atgctagccg ttaaaatggc ttctaacttt actcagttcg ttctcgtcga caatggcgga 3361 actggcgacg tgactgtcgc cccaagcaac ttcgctaacg ggatcgctga atggatcagc 3421 tctaactcgc gttcacaggc ttacaaagta acctgtagcg ttcgtcagag ctctgcgcag 3481 aatcgcaaat acaccatcaa agtcgaggtg cctaaaggcg cctggcgttc gtacttaaat 3541 atggaactaa ccattccaat tttcgccacg aattccgact gcgagcttat tgttaaggca 3601 atgcaaggtc tcctaaaaga tggaaacccg attccctcag caatcgcagc aaactccggc 3661 atctacgcgg attctagacg ggatccaccg gtcgccacca tggtgagcaa gggcgaggag 3721 ctgttcaccg gggtggtgcc catcctggtc gagctggacg gcgacgtaaa cggccacaag 3781 ttcagcgtgt ccggcgaggg cgagggcgat gccacctacg gcaagctgac cctgaagctg 3841 atctgcacca ccggcaagct gcccgtgcct tggcccaccc tcgtgaccac cctgggctac 3901 ggcctgcagt gcttcgcccg ctaccccgac cacatgaagc agcacgactt cttcaagtcc 3961 gccatgcccg aaggctacgt ccaggagcgc accatcttct tcaaggacga cggcaactac 4021 aagacccgcg ccgaggtgaa gttcgagggc gacaccctgg tgaaccgcat cgagctgaag 4081 ggcatcgact tcaaggagga cggcaacatc ctggggcaca agctggagta caactacaac 4141 agccacaacg tctatatcac ctaaatcgat ggatccctcc ccccccccta acgttactgg 4201 ccgaagccgc ttggaataag gccggtgtgc gtttgtctat atgttatttt ccaccatatt 4261 gccgtctttt ggcaatgtga gggcccggaa acctggccct gtcttcttga cgagcattcc 4321 taggggtctt tcccctctcg ccaaaggaat gcaaggtctg ttgaatgtcg tgaaggaagc 4381 agttcctctg gaagcttctt gaagacaaac aacgtctgta gcgacccttt gcaggcagcg 4441 gaacccccca cctggcgaca ggtgcctctg cggccaaaag ccacgtgtat aagatacacc 4501 tgcaaaggcg gcacaacccc agtgccacgt tgtgagttgg atagttgtgg aaagagtcaa 4561 atggctctcc tcaagcgtat tcaacaaggg gctgaaggat gcccagaagg taccccattg 4621 tatgggatct gatctggggc ctcggtgcac atgctttaca tgtgtttagt cgaggttaaa 4681 aaaacgtcta ggccccccga accacgggga cgtggttttc ctttgaaaaa cacgatgata 4741 atatggccac agcctgcagg atgggcccaa aaaagaaaag aaaagttggc tacccctacg 4801 acgtgcccga ctacgccatc gaaggccgcc atctagcctc caaaaccatc gttctttcgg 4861 tcggcgaggc tactcgcact ctgactgaga tccagtccac cgcagaccgt cagatcttcg 4921 aagagaaggt cgggcctctg gtgggtcggc tgcgcctcac ggcttcgctc cgtcaaaacg 4981 gagccaagac cgcgtatcgc gtcaacctaa aactggatca ggcggacgtc gttgattccg 5041 gacttccgaa agtgcgctac actcaggtat ggtcgcacga cgtgacaatc gttgcgaata 5101 gcaccgaggc ctcgcgcaaa tcgttgtacg atttgaccaa gtccctcgtc gcgacctcgc 5161 aggtcgaaga tcttgtcgtc aaccttgtgc cgctgggccg tgcggatcca ccggtcgcca 5221 ccgccgacaa gcagaagaac ggcatcaagg ccaacttcaa gatccgccac aacatcgagg 5281 acggcggcgt gcagctcgcc gaccactacc agcagaacac ccccatcggc gacggccccg 5341 tgctgctgcc cgacaaccac tacctgagct accagtccgc cctgagcaaa gaccccaacg 5401 agaagcgcga tcacatggtc ctgctggagt tcgtgaccgc cgccgggatc actctcggca 5461 tggacgagct gtacaagtaa atcgatgacc tacgtcatgc aggggcgata gatcctaatc 5521 aacctctgga ttacaaaatt tgtgaaagat tgactggtat tcttaactat gttgctcctt 5581 ttacgctatg tggatacgct gctttaatgc ctttgtatca tgctattgct tcccgtatgg 5641 ctttcatttt ctcctccttg tataaatcct ggttgctgtc tctttatgag gagttgtggc 5701 ccgttgtcag gcaacgtggc gtggtgtgca ctgtgtttgc tgacgcaacc cccactggtt 5761 ggggcattgc caccacctgt cagctccttt ccgggacttt cgctttcccc ctccctattg 5821 ccacggcgga actcatcgcc gcctgccttg cccgctgctg gacaggggct cggctgttgg 5881 gcactgacaa ttccgtggtg ttgtcgggga aatcatcgtc ctttccttgg ctgctcgcct 5941 gtgttgccac ctggattctg cgcgggacgt ccttctgcta cgtcccttcg gccctcaatc 6001 cagcggacct tccttcccgc ggcctgctgc cggctctgcg gcctcttccg cgtcttcgcc 6061 ttcgccctca gacgagtcgg atctcccttt gggccgcctc cccgcctgag atcctttaag 6121 accaatgact tacaaggcag ctgtagatct tagccacttt ttaaaagaaa aggggggact 6181 ggaagggcta attcactccc aacgaagaca agatctgctt tttgcttgta ctgggtctct 6241 ctggttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa 6301 gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc 6361 tggtaactag agatccctca gaccctttta gtcagtgtgg aaaatctcta gcagtagtag 6421 ttcatgtcat cttattattc agtatttata acttgcaaag aaatgaatat cagagagtga 6481 gaggcccggg ttaattaagg aaagggctag atcattcttg aagacgaaag ggcctcgtga 6541 tacgcctatt tttataggtt aatgtcatga taataatggt ttcttagacg tcaggtggca 6601 cttttcgggg aaatgtgcgc ggaaccccta tttgtttatt tttctaaata cattcaaata 6661 tgtatccgct catgagacaa taaccctgat aaatgcttca ataatattga aaaaggaaga 6721 gtatgagtat tcaacatttc cgtgtcgccc ttattccctt ttttgcggca ttttgccttc 6781 ctgtttttgc tcacccagaa acgctggtga aagtaaaaga tgctgaagat cagttgggtg 6841 cacgagtggg ttacatcgaa ctggatctca acagcggtaa gatccttgag agttttcgcc 6901 ccgaagaacg ttttccaatg atgagcactt ttaaagttct gctatgtggc gcggtattat 6961 cccgtgttga cgccgggcaa gagcaactcg gtcgccgcat acactattct cagaatgact 7021 tggttgagta ctcaccagtc acagaaaagc atcttacgga tggcatgaca gtaagagaat 7081 tatgcagtgc tgccataacc atgagtgata acactgcggc caacttactt ctgacaacga 7141 tcggaggacc gaaggagcta accgcttttt tgcacaacat gggggatcat gtaactcgcc 7201 ttgatcgttg ggaaccggag ctgaatgaag ccataccaaa cgacgagcgt gacaccacga 7261 tgcctgtagc aatggcaaca acgttgcgca aactattaac tggcgaacta cttactctag 7321 cttcccggca acaattaata gactggatgg aggcggataa agttgcagga ccacttctgc 7381 gctcggccct tccggctggc tggtttattg ctgataaatc tggagccggt gagcgtgggt 7441 ctcgcggtat cattgcagca ctggggccag atggtaagcc ctcccgtatc gtagttatct 7501 acacgacggg gagtcaggca actatggatg aacgaaatag acagatcgct gagataggtg 7561 cctcactgat taagcattgg taactgtcag accaagttta ctcatatata ctttagattg 7621 atttaaaact tcatttttaa tttaaaagga tctaggtgaa gatccttttt gataatctca 7681 tgaccaaaat cccttaacgt gagttttcgt tccactgagc gtcagacccc gtagaaaaga 7741 tcaaaggatc ttcttgagat cctttttttc tgcgcgtaat ctgctgcttg caaacaaaaa 7801 aaccaccgct accagcggtg gtttgtttgc cggatcaaga gctaccaact ctttttccga 7861 aggtaactgg cttcagcaga gcgcagatac caaatactgt tcttctagtg tagccgtagt 7921 taggccacca cttcaagaac tctgtagcac cgcctacata cctcgctctg ctaatcctgt 7981 taccagtggc tgctgccagt ggcgataagt cgtgtcttac cgggttggac tcaagacgat 8041 agttaccgga taaggcgcag cggtcgggct gaacgggggg ttcgtgcaca cagcccagct 8101 tggagcgaac gacctacacc gaactgagat acctacagcg tgagctatga gaaagcgcca 8161 cgcttcccga agggagaaag gcggacaggt atccggtaag cggcagggtc ggaacaggag 8221 agcgcacgag ggagcttcca gggggaaacg cctggtatct ttatagtcct gtcgggtttc 8281 gccacctctg acttgagcgt cgatttttgt gatgctcgtc aggggggcgg agcctatgga 8341 aaaacgccag caacgcggcc tttttacggt tcctggcctt ttgctggcct tttgctcaca 8401 tgttctttcc tgcgttatcc cctgattctg tggataaccg tattaccgcc tttgagtgag 8461 ctgataccgc tcgccgcagc cgaacgaccg agcgcagcga gtcagtgagc gaggaagcgg 8521 aag //
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