质粒名称: | pLH-sgRNA1-PP7-boxB |
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出品公司: | 爱迪基因 |
目录编号: | 75393 |
存储实验室: | Thoru Pederson |
载体骨架基本信息 |
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载体名称: | pLKO.1 |
载体抗性: | 氨苄青霉素 |
空载体大小: | 8000 bp |
完整质粒大小: | 8318 bp |
载体类型: | 哺乳动物表达,慢病毒,CRISPR |
高拷贝/低拷贝: | 高拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | sgRNA1-2XPP7-boxB |
物种来源: | Synthetic |
插入大小: | 116 bp |
启动子 | U6 |
克隆方法: | 限制性内切酶 |
5' 克隆位点: | Sbf I(未破坏) |
3' 克隆位点: | EcoR I (未破坏) |
5' 测序引物 | cccttcaccgagggcctatttccc |
3' 测序引物 | CTATTCTTTCCCCTGCACTGTACCC |
文献引用方法 |
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材料和方法部分: | pLH-sgRNA1-PP7-boxB was a gift from Thoru Pederson (Addgene plasmid # 75393 ; http://n2t.net/addgene:75393 ; RRID:Addgene_75393) |
参考文献部分: | Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T. Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. 10.1038/nbt.3526 PubMed 27088723 |
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载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS pLH-sgRNA1-PP7-boxB 8307 bp ds-DNA circular SYN 11-FEB-2020 DEFINITION sgRNA1-PP7-boxB. ACCESSION . VERSION . KEYWORDS pLH-sgRNA1-PP7-boxB SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8307) AUTHORS Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T TITLE Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. JOURNAL Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. PUBMED 27088723 REFERENCE 2 (bases 1 to 8307) AUTHORS . TITLE Direct Submission JOURNAL Exported Feb 11, 2020 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..8307 /organism="synthetic DNA construct" /mol_type="other DNA" primer_bind 123..142 /label=pBR322ori-F /note="pBR322 origin, forward primer" primer_bind 376..393 /label=L4440 /note="L4440 vector, forward primer" protein_bind 510..531 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." promoter 546..576 /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 584..600 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." primer_bind 589..611 /label=M13/pUC Reverse /note="In lacZ gene" primer_bind 608..624 /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind 608..624 /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind 643..663 /label=T3 /note="T3 promoter, forward primer" promoter 645..663 /label=T3 promoter /note="promoter for bacteriophage T3 RNA polymerase" promoter 691..917 /label=RSV promoter /note="Rous sarcoma virus enhancer/promoter" LTR 918..1098 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" misc_feature 1145..1270 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" misc_feature 1763..1996 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." promoter 2523..2763 /label=U6 promoter /note="RNA polymerase III promoter for human U6 snRNA" primer_bind 2523..2543 /label=hU6-F /note="Human U6 promoter, forward primer" primer_bind 2694..2713 /label=LKO.1 5' /note="Human U6 promoter, forward primer" CDS 3112..3417 /codon_start=1 /gene="ccdB" /product="CcdB, a bacterial toxin that poisons DNA gyrase" /label=ccdB /note="Plasmids containing the ccdB gene cannot be propagated in standard E. coli strains." /translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI" primer_bind 3296..3315 /label=ccdB-fwd /note="ccdB gene, forward primer" misc_feature 3602..3719 /label=cPPT/CTS /note="central polypurine tract and central termination sequence of HIV-1" promoter 3768..4278 /label=hPGK promoter /note="human phosphoglycerate kinase 1 promoter" primer_bind 4197..4215 /label=hPGK-F /note="Human PGK promoter, forward primer" CDS 4368..5393 /codon_start=1 /gene="aph(4)-Ia" /product="aminoglycoside phosphotransferase from E. coli" /label=HygR /note="confers resistance to hygromycin" /translation="MKKPELTATSVEKFLIEKFDSVSDLMQLSEGEESRAFSFDVGGRG YVLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQDLP ETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQ TVMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF GDSQYEVANIFFWRPWLACMEQQTRYFERRHPELAGSPRLRAYMLRIGLDQLYQSLVDG NFDDAAWAQGRCDAIVRSGAGTVGRTQIARRSAAVWTDGCVEVLADSGNRRPSTRPRAK E" primer_bind complement(5417..5433) /label=KS primer /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5418..5434) /label=pBluescriptKS /note="For pBluescript vector" LTR 5516..5749 /label=3' LTR (Delta-U3) /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" polyA_signal 5821..5942 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(5858..5877) /label=SV40pA-R /note="SV40 polyA, reverse primer" primer_bind 5912..5931 /label=EBV-rev /note="SV40 polyA terminator, reverse primer" rep_origin 5982..6117 /label=SV40 ori /note="SV40 origin of replication" primer_bind 6044..6063 /label=SV40pro-F /note="SV40 promoter/origin, forward primer" primer_bind complement(6137..6156) /label=T7 /note="T7 promoter, forward primer" promoter complement(6138..6156) /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" primer_bind complement(6166..6183) /label=M13 Forward /note="In lacZ gene. Also called M13-F20 or M13 (-21) Forward" primer_bind complement(6166..6182) /label=M13 fwd /note="common sequencing primer, one of multiple similar variants" primer_bind complement(6175..6197) /label=M13/pUC Forward /note="In lacZ gene" rep_origin 6324..6779 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(6411..6430) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 6621..6642 /label=F1ori-F /note="F1 origin, forward primer" promoter 6805..6909 /gene="bla" /label=AmpR promoter CDS 6910..7770 /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind complement(7128..7147) /label=Amp-R /note="Ampicillin resistance gene, reverse primer" rep_origin 7941..222 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" ORIGIN 1 gaactgagat acctacagcg tgagctatga gaaagcgcca cgcttcccga agggagaaag 61 gcggacaggt atccggtaag cggcagggtc ggaacaggag agcgcacgag ggagcttcca 121 gggggaaacg cctggtatct ttatagtcct gtcgggtttc gccacctctg acttgagcgt 181 cgatttttgt gatgctcgtc aggggggcgg agcctatgga aaaacgccag caacgcggcc 241 tttttacggt tcctggcctt ttgctggcct tttgctcaca tgttctttcc tgcgttatcc 301 cctgattctg tggataaccg tattaccgcc tttgagtgag ctgataccgc tcgccgcagc 361 cgaacgaccg agcgcagcga gtcagtgagc gaggaagcgg aagagcgccc aatacgcaaa 421 ccgcctctcc ccgcgcgttg gccgattcat taatgcagct ggcacgacag gtttcccgac 481 tggaaagcgg gcagtgagcg caacgcaatt aatgtgagtt agctcactca ttaggcaccc 541 caggctttac actttatgct tccggctcgt atgttgtgtg gaattgtgag cggataacaa 601 tttcacacag gaaacagcta tgaccatgat tacgccaagc gcgcaattaa ccctcactaa 661 agggaacaaa agctggagct gcaagcttaa tgtagtctta tgcaatactc ttgtagtctt 721 gcaacatggt aacgatgagt tagcaacatg ccttacaagg agagaaaaag caccgtgcat 781 gccgattggt ggaagtaagg tggtacgatc gtgccttatt aggaaggcaa cagacgggtc 841 tgacatggat tggacgaacc actgaattgc cgcattgcag agatattgta tttaagtgcc 901 tagctcgata cataaacggg tctctctggt tagaccagat ctgagcctgg gagctctctg 961 gctaactagg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag 1021 tgtgtgcccg tctgttgtgt gactctggta actagagatc cctcagaccc ttttagtcag 1081 tgtggaaaat ctctagcagt ggcgcccgaa cagggacttg aaagcgaaag ggaaaccaga 1141 ggagctctct cgacgcagga ctcggcttgc tgaagcgcgc acggcaagag gcgaggggcg 1201 gcgactggtg agtacgccaa aaattttgac tagcggaggc tagaaggaga gagatgggtg 1261 cgagagcgtc agtattaagc gggggagaat tagatcgcga tgggaaaaaa ttcggttaag 1321 gccaggggga aagaaaaaat ataaattaaa acatatagta tgggcaagca gggagctaga 1381 acgattcgca gttaatcctg gcctgttaga aacatcagaa ggctgtagac aaatactggg 1441 acagctacaa ccatcccttc agacaggatc agaagaactt agatcattat ataatacagt 1501 agcaaccctc tattgtgtgc atcaaaggat agagataaaa gacaccaagg aagctttaga 1561 caagatagag gaagagcaaa acaaaagtaa gaccaccgca cagcaagcgg ccgctgatct 1621 tcagacctgg aggaggagat atgagggaca attggagaag tgaattatat aaatataaag 1681 tagtaaaaat tgaaccatta ggagtagcac ccaccaaggc aaagagaaga gtggtgcaga 1741 gagaaaaaag agcagtggga ataggagctt tgttccttgg gttcttggga gcagcaggaa 1801 gcactatggg cgcagcgtca atgacgctga cggtacaggc cagacaatta ttgtctggta 1861 tagtgcagca gcagaacaat ttgctgaggg ctattgaggc gcaacagcat ctgttgcaac 1921 tcacagtctg gggcatcaag cagctccagg caagaatcct ggctgtggaa agatacctaa 1981 aggatcaaca gctcctgggg atttggggtt gctctggaaa actcatttgc accactgctg 2041 tgccttggaa tgctagttgg agtaataaat ctctggaaca gatttggaat cacacgacct 2101 ggatggagtg ggacagagaa attaacaatt acacaagctt aatacactcc ttaattgaag 2161 aatcgcaaaa ccagcaagaa aagaatgaac aagaattatt ggaattagat aaatgggcaa 2221 gtttgtggaa ttggtttaac ataacaaatt ggctgtggta tataaaatta ttcataatga 2281 tagtaggagg cttggtaggt ttaagaatag tttttgctgt actttctata gtgaatagag 2341 ttaggcaggg atattcacca ttatcgtttc agacccacct cccaaccccg aggggacccg 2401 acaggcccga aggaatagaa gaagaaggtg gagagagaga cagagacaga tccattcgat 2461 tagtgaacgg atctcgacgg tatcgatcac gagactagcc tcgagcggcc gcccccttca 2521 ccgagggcct atttcccatg attccttcat atttgcatat acgatacaag gctgttagag 2581 agataattgg aattaatttg actgtaaaca caaagatatt agtacaaaat acgtgacgta 2641 gaaagtaata atttcttggg tagtttgcag ttttaaaatt atgttttaaa atggactatc 2701 atatgcttac cgtaacttga aagtatttcg atttcttggc tttatatatc ttgtggaaag 2761 gacgaaacac cggtgtcttc gaggcttact aaaagccaga taacagtatg cgtatttgcg 2821 cgctgatttt tgcggtataa gaatatatac tgatatgtat acccgaagta tgtcaaaaag 2881 aggtgtgcta tgaagcagcg tattacagtg acagttgaca gcgacagcta tcagttgctc 2941 aaggcatata tgatgtcaat atctccggtc tggtaagcac aaccatgcag aatgaagccc 3001 gtcgtctgcg tgccgaacgc tggaaagcgg aaaatcagga agggatggct gaggtcgccc 3061 ggtttattga aatgaacggc tcttttgctg acgagaacag ggactggtga aatgcagttt 3121 aaggtttaca cctataaaag agagagccgt tatcgtctgt ttgtggatgt acagagtgat 3181 attattgaca cgcccgggcg acggatggtg atccccctgg ccagtgcacg tctgctgtca 3241 gataaagtct cccgtgaact ttacccggtg gtgcatatcg gggatgaaag ctggcgcatg 3301 atgaccaccg atatggccag tgtgccggtc tccgttatcg gggaagaagt ggctgatctc 3361 agccaccgcg aaaatgacat caaaaacgcc attaacctga tgttctgggg aatataaacc 3421 ctgcaggacg aagacccgtt tgagagctac cggagcagac gatatggcgt cgctccggta 3481 gcaagttcaa ataaggctag tccgttatca acttgggccc tgaagaaggg cccaagtggc 3541 accgagtcgg tgcttttttt gaattctcga cctcgagaca aatggcagta ttcatccaca 3601 attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata gtagacataa 3661 tagcaacaga catacaaact aaagaattac aaaaacaaat tacaaaaatt caaaattttc 3721 gggtttatta cagggacagc agagatccac tttggccgcg gctcgagggg gttggggttg 3781 cgccttttcc aaggcagccc tgggtttgcg cagggacgcg gctgctctgg gcgtggttcc 3841 gggaaacgca gcggcgccga ccctgggtct cgcacattct tcacgtccgt tcgcagcgtc 3901 acccggatct tcgccgctac ccttgtgggc cccccggcga cgcttcctgc tccgccccta 3961 agtcgggaag gttccttgcg gttcgcggcg tgccggacgt gacaaacgga agccgcacgt 4021 ctcactagta ccctcgcaga cggacagcgc cagggagcaa tggcagcgcg ccgaccgcga 4081 tgggctgtgg ccaatagcgg ctgctcagca gggcgcgccg agagcagcgg ccgggaaggg 4141 gcggtgcggg aggcggggtg tggggcggta gtgtgggccc tgttcctgcc cgcgcggtgt 4201 tccgcattct gcaagcctcc ggagcgcacg tcggcagtcg gctccctcgt tgaccgaatc 4261 accgacctct ctccccaggg ggatccaccg gatcaagctt gccagctggg gcgccctctg 4321 gtaaggttgg gaagccctgc agatctgatc ccggggggca atgagatatg aaaaagcctg 4381 aactcaccgc gacgtctgtc gagaagtttc tgatcgaaaa gttcgacagc gtctccgacc 4441 tgatgcagct ctcggagggc gaagaatctc gtgctttcag cttcgatgta ggagggcgtg 4501 gatatgtcct gcgggtaaat agctgcgccg atggtttcta caaagatcgt tatgtttatc 4561 ggcactttgc atcggccgcg ctcccgattc cggaagtgct tgacattggg gaatttagcg 4621 agagcctgac ctattgcatc tcccgccgtg cacagggtgt cacgttgcaa gatctgcctg 4681 aaaccgaact gcccgctgtt ctgcagccgg tcgcggaggc catggatgcg atcgctgcgg 4741 ccgatcttag ccagacgagc gggttcggcc cattcggacc gcaaggaatc ggtcaataca 4801 ctacatggcg tgatttcata tgcgcgattg ctgatcccca tgtgtatcac tggcaaactg 4861 tgatggacga caccgtcagt gcgtccgtcg cgcaggctct cgatgagctg atgctttggg 4921 ccgaggactg ccccgaagtc cggcacctcg tgcacgcgga tttcggctcc aacaatgtcc 4981 tgacggacaa tggccgcata acagcggtca ttgactggag cgaggcgatg ttcggggatt 5041 cccaatacga ggtcgccaac atcttcttct ggaggccgtg gttggcttgt atggagcagc 5101 agacgcgcta cttcgagcgg aggcatccgg agcttgcagg atcgccgcgg ctccgggcgt 5161 atatgctccg cattggtctt gaccaactct atcagagctt ggttgacggc aatttcgatg 5221 atgcagcttg ggcgcagggt cgatgcgacg caatcgtccg atccggagcc gggactgtcg 5281 ggcgtacaca aatcgcccgc agaagcgcgg ccgtctggac cgatggctgt gtagaagtac 5341 tcgccgatag tggaaaccga cgccccagca ctcgtccgag ggcaaaggaa tagagtagat 5401 gccgaccggg atctatcgat accgtcgacc tcgagggggg gcccggtacc tttaagacca 5461 atgacttaca aggcagctgt agatcttagc cactttttaa aagaaaaggg gggactggaa 5521 gggctaattc actcccaacg aagaaaagat ctgctttttg cttgtactgg gtctctctgg 5581 ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct 5641 caataaagct tgccttgagt gcttcaagta gtgtgtgccc gtctgttgtg tgactctggt 5701 aactagagat ccctcagacc cttttagtca gtgtggaaaa tctctagcag tagtagttca 5761 tgtcatctta ttattcagta tttataactt gcaaagaaat gaatatcaga gagtgagagg 5821 aacttgttta ttgcagctta taatggttac aaataaagca atagcatcac aaatttcaca 5881 aataaagcat ttttttcact gcattctagt tgtggtttgt ccaaactcat caatgtatct 5941 tatcatgtct ggctctagct atcccgcccc taactccgcc catcccgccc ctaactccgc 6001 ccagttccgc ccattctccg ccccatggct gactaatttt ttttatttat gcagaggccg 6061 aggccgcctc ggcctctgag ctattccaga agtagtgagg aggctttttt ggaggcctag 6121 ggacgtaccc aattcgccct atagtgagtc gtattacgcg cgctcactgg ccgtcgtttt 6181 acaacgtcgt gactgggaaa accctggcgt tacccaactt aatcgccttg cagcacatcc 6241 ccctttcgcc agctggcgta atagcgaaga ggcccgcacc gatcgccctt cccaacagtt 6301 gcgcagcctg aatggcgaat gggacgcgcc ctgtagcggc gcattaagcg cggcgggtgt 6361 ggtggttacg cgcagcgtga ccgctacact tgccagcgcc ctagcgcccg ctcctttcgc 6421 tttcttccct tcctttctcg ccacgttcgc cggctttccc cgtcaagctc taaatcgggg 6481 gctcccttta gggttccgat ttagtgcttt acggcacctc gaccccaaaa aacttgatta 6541 gggtgatggt tcacgtagtg ggccatcgcc ctgatagacg gtttttcgcc ctttgacgtt 6601 ggagtccacg ttctttaata gtggactctt gttccaaact ggaacaacac tcaaccctat 6661 ctcggtctat tcttttgatt tataagggat tttgccgatt tcggcctatt ggttaaaaaa 6721 tgagctgatt taacaaaaat ttaacgcgaa ttttaacaaa atattaacgc ttacaattta 6781 ggtggcactt ttcggggaaa tgtgcgcgga acccctattt gtttattttt ctaaatacat 6841 tcaaatatgt atccgctcat gagacaataa ccctgataaa tgcttcaata atattgaaaa 6901 aggaagagta tgagtattca acatttccgt gtcgccctta ttcccttttt tgcggcattt 6961 tgccttcctg tttttgctca cccagaaacg ctggtgaaag taaaagatgc tgaagatcag 7021 ttgggtgcac gagtgggtta catcgaactg gatctcaaca gcggtaagat ccttgagagt 7081 tttcgccccg aagaacgttt tccaatgatg agcactttta aagttctgct atgtggcgcg 7141 gtattatccc gtattgacgc cgggcaagag caactcggtc gccgcataca ctattctcag 7201 aatgacttgg ttgagtactc accagtcaca gaaaagcatc ttacggatgg catgacagta 7261 agagaattat gcagtgctgc cataaccatg agtgataaca ctgcggccaa cttacttctg 7321 acaacgatcg gaggaccgaa ggagctaacc gcttttttgc acaacatggg ggatcatgta 7381 actcgccttg atcgttggga accggagctg aatgaagcca taccaaacga cgagcgtgac 7441 accacgatgc ctgtagcaat ggcaacaacg ttgcgcaaac tattaactgg cgaactactt 7501 actctagctt cccggcaaca attaatagac tggatggagg cggataaagt tgcaggacca 7561 cttctgcgct cggcccttcc ggctggctgg tttattgctg ataaatctgg agccggtgag 7621 cgtgggtctc gcggtatcat tgcagcactg gggccagatg gtaagccctc ccgtatcgta 7681 gttatctaca cgacggggag tcaggcaact atggatgaac gaaatagaca gatcgctgag 7741 ataggtgcct cactgattaa gcattggtaa ctgtcagacc aagtttactc atatatactt 7801 tagattgatt taaaacttca tttttaattt aaaaggatct aggtgaagat cctttttgat 7861 aatctcatga ccaaaatccc ttaacgtgag ttttcgttcc actgagcgtc agaccccgta 7921 gaaaagatca aaggatcttc ttgagatcct ttttttctgc gcgtaatctg ctgcttgcaa 7981 acaaaaaaac caccgctacc agcggtggtt tgtttgccgg atcaagagct accaactctt 8041 tttccgaagg taactggctt cagcagagcg cagataccaa atactgttct tctagtgtag 8101 ccgtagttag gccaccactt caagaactct gtagcaccgc ctacatacct cgctctgcta 8161 atcctgttac cagtggctgc tgccagtggc gataagtcgt gtcttaccgg gttggactca 8221 agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc gtgcacacag 8281 cccagcttgg agcgaacgac ctacacc //