质粒名称: | pHAGE-EFS-MCP-3XBFPnls |
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出品公司: | 爱迪基因 |
目录编号: | 75384 |
存储实验室: | Thoru Pederson |
载体骨架基本信息 |
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载体名称: | pHAGE-DEST |
载体出品公司: | -- |
载体抗性: | 氨苄青霉素 |
空载体大小: | 6000 bp |
完整质粒大小: | 8727 bp |
载体修饰: | -- |
载体类型: | 哺乳动物表达,慢病毒 |
筛选标记: | -- |
高拷贝/低拷贝: | 高拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | MCP |
物种来源: | Synthetic |
插入大小: | 342 bp |
基因突变: | -- |
GenBank编号 | -- |
启动子 | EFS |
标签/融合蛋白: | 3XBFP(插入件上的C端子) |
克隆方法: | 限制性内切酶 |
5' 克隆位点: | Mlu I(未破坏) |
3' 克隆位点: | BamH I(未破坏) |
5' 测序引物 | cgaaggaatagaagaagaaggtgga |
3' 测序引物 | CCAAAGGGAGATCCGACTCG |
文献引用方法 |
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材料和方法部分: | pHAGE-EFS-MCP-3XBFPnls was a gift from Thoru Pederson (Addgene plasmid # 75384 ; http://n2t.net/addgene:75384 ; RRID:Addgene_75384) |
参考文献部分: | Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T. Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. 10.1038/nbt.3526 PubMed 27088723 |
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载体基本信息
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载体简介
载体序列
LOCUS pHAGE-EFS-MCP-3XBFPnls 8728 bp ds-DNA circular SYN 14-SEP-2018 DEFINITION MCP-3XBFPnls. ACCESSION . VERSION . KEYWORDS pHAGE-EFS-MCP-3XBFPnls SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8728) AUTHORS Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T TITLE Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. JOURNAL Nat Biotechnol. 2016 Apr 18. doi: 10.1038/nbt.3526. PUBMED 27088723 REFERENCE 2 (bases 1 to 8728) AUTHORS . TITLE Direct Submission JOURNAL Exported Sep 14, 2018 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..8728 /organism="synthetic DNA construct" /mol_type="other DNA" LTR 1..634 /label=3' LTR /note="3' long terminal repeat (LTR) from HIV-1" misc_feature 681..806 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" misc_feature 1303..1536 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." misc_feature 2058..2175 /label=cPPT/CTS /note="central polypurine tract and central termination sequence of HIV-1" promoter 2265..2476 /label=EF-1-alpha core promoter /note="core promoter for human elongation factor EF-1-alpha" regulatory 2522..2531 /regulatory_class="other" /note="vertebrate consensus sequence for strong initiation of translation (Kozak, 1987)" CDS 2912..3622 /codon_start=1 /product="enhanced monomeric blue fluorescent protein (Subach et al., 2011)" /label=mTagBFP2 /note="mammalian codon-optimized" /translation="MVSKGEELIKENMHMKLYMEGTVDNHHFKCTSEGEGKPYEGTQTM RIKVVEGGPLPFAFDILATSFLYGSKTFINHTQGIPDFFKQSFPEGFTWERVTTYEDGG VLTATQDTSLQDGCLIYNVKIRGVNFTSNGPVMQKKTLGWEAFTETLYPADGGLEGRND MALKLVGGSHLIANAKTTYRSKKPAKNLKMPGVYYVDYRLERIKEANNETYVEQHEVAV ARYCDLPSKLGHKLN" CDS 3641..4351 /codon_start=1 /product="enhanced monomeric blue fluorescent protein (Subach et al., 2011)" /label=mTagBFP2 /note="mammalian codon-optimized" /translation="MVSKGEELIKENMHMKLYMEGTVDNHHFKCTSEGEGKPYEGTQTM RIKVVEGGPLPFAFDILATSFLYGSKTFINHTQGIPDFFKQSFPEGFTWERVTTYEDGG VLTATQDTSLQDGCLIYNVKIRGVNFTSNGPVMQKKTLGWEAFTETLYPADGGLEGRND MALKLVGGSHLIANAKTTYRSKKPAKNLKMPGVYYVDYRLERIKEANNETYVEQHEVAV ARYCDLPSKLGHKLN" CDS 4370..5080 /codon_start=1 /product="enhanced monomeric blue fluorescent protein (Subach et al., 2011)" /label=mTagBFP2 /note="mammalian codon-optimized" /translation="MVSKGEELIKENMHMKLYMEGTVDNHHFKCTSEGEGKPYEGTQTM RIKVVEGGPLPFAFDILATSFLYGSKTFINHTQGIPDFFKQSFPEGFTWERVTTYEDGG VLTATQDTSLQDGCLIYNVKIRGVNFTSNGPVMQKKTLGWEAFTETLYPADGGLEGRND MALKLVGGSHLIANAKTTYRSKKPAKNLKMPGVYYVDYRLERIKEANNETYVEQHEVAV ARYCDLPSKLGHKLN" CDS 5087..5107 /codon_start=1 /product="nuclear localization signal of SV40 (simian virus 40) large T antigen" /label=SV40 NLS /translation="PKKKRKV" misc_feature 5118..5706 /label=WPRE /note="woodchuck hepatitis virus posttranscriptional regulatory element" primer_bind complement(5171..5191) /label=WPRE-R /note="WPRE, reverse primer" CDS complement(5589..5600) /codon_start=1 /product="Factor Xa recognition and cleavage site" /label=Factor Xa site /translation="IEGR" LTR 5781..6014 /label=3' LTR (Delta-U3) /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" primer_bind complement(6133..6151) /label=pBRforEco /note="pBR322 vectors, upsteam of EcoRI site, forward primer" promoter 6219..6323 /gene="bla" /label=AmpR promoter CDS 6324..7184 /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind complement(6542..6561) /label=Amp-R /note="Ampicillin resistance gene, reverse primer" rep_origin 7355..7943 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind 7844..7863 /label=pBR322ori-F /note="pBR322 origin, forward primer" primer_bind 8097..8114 /label=L4440 /note="L4440 vector, forward primer" primer_bind 8206..8225 /label=SV40pro-F /note="SV40 promoter/origin, forward primer" protein_bind 8354..8375 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." promoter 8390..8420 /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 8428..8444 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." primer_bind 8433..8455 /label=M13/pUC Reverse /note="In lacZ gene" primer_bind 8452..8468 /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind 8452..8468 /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind 8518..8537 /label=EBV-rev /note="SV40 polyA terminator, reverse primer" ORIGIN 1 tggaagggct aattcactcc caaagaagac aagatatcct tgatctgtgg atctaccaca 61 cacaaggcta cttccctgat tagcagaact acacaccagg gccaggggtc agatatccac 121 tgacctttgg atggtgctac aagctagtac cagttgagcc agataaggta gaagaggcca 181 ataaaggaga gaacaccagc ttgttacacc ctgtgagcct gcatgggatg gatgacccgg 241 agagagaagt gttagagtgg aggtttgaca gccgcctagc atttcatcac gtggcccgag 301 agctgcatcc ggagtacttc aagaactgct gatatcgagc ttgctacaag ggactttccg 361 ctggggactt tccagggagg cgtggcctgg gcgggactgg ggagtggcga gccctcagat 421 cctgcatata agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga 481 gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct 541 tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact ctggtaacta gagatccctc 601 agaccctttt agtcagtgtg gaaaatctct agcagtggcg cccgaacagg gacttgaaag 661 cgaaagggaa accagaggag ctctctcgac gcaggactcg gcttgctgaa gcgcgcacgg 721 caagaggcga ggggcggcga ctggtgagta cgccaaaaat tttgactagc ggaggctaga 781 aggagagaga tgggtgcgag agcgtcagta ttaagcgggg gagaattaga tcgcgatggg 841 aaaaaattcg gttaaggcca gggggaaaga aaaaatataa attaaaacat atagtatggg 901 caagcaggga gctagaacga ttcgcagtta atcctggcct gttagaaaca tcagaaggct 961 gtagacaaat actgggacag ctacaaccat cccttcagac aggatcagaa gaacttagat 1021 cattatataa tacagtagca accctctatt gtgtgcatca aaggatagag ataaaagaca 1081 ccaaggaagc tttagacaag atagaggaag agcaaaacaa aagtaagacc accgcacagc 1141 aagcggccgg ccgctgatct tcagacctgg aggaggagat atgagggaca attggagaag 1201 tgaattatat aaatataaag tagtaaaaat tgaaccatta ggagtagcac ccaccaaggc 1261 aaagagaaga gtggtgcaga gagaaaaaag agcagtggga ataggagctt tgttccttgg 1321 gttcttggga gcagcaggaa gcactatggg cgcagcgtca atgacgctga cggtacaggc 1381 cagacaatta ttgtctggta tagtgcagca gcagaacaat ttgctgaggg ctattgaggc 1441 gcaacagcat ctgttgcaac tcacagtctg gggcatcaag cagctccagg caagaatcct 1501 ggctgtggaa agatacctaa aggatcaaca gctcctgggg atttggggtt gctctggaaa 1561 actcatttgc accactgctg tgccttggaa tgctagttgg agtaataaat ctctggaaca 1621 gatttggaat cacacgacct ggatggagtg ggacagagaa attaacaatt acacaagctt 1681 aatacactcc ttaattgaag aatcgcaaaa ccagcaagaa aagaatgaac aagaattatt 1741 ggaattagat aaatgggcaa gtttgtggaa ttggtttaac ataacaaatt ggctgtggta 1801 tataaaatta ttcataatga tagtaggagg cttggtaggt ttaagaatag tttttgctgt 1861 actttctata gtgaatagag ttaggcaggg atattcacca ttatcgtttc agacccacct 1921 cccaaccccg aggggacccg acaggcccga aggaatagaa gaagaaggtg gagagagaga 1981 cagagacaga tccattcgat tagtgaacgg atctcgacgg tatcgccgaa ttgacaaatg 2041 gcagtattca tccacaattt taaaagaaaa ggggggattg gggggtacag tgcaggggaa 2101 agaatagtag acataatagc aacagacata caaactaaag aattacaaaa acaaattaca 2161 aaaattcaaa attttcgggt ttattacagg gacagcagag atccagtttg gactagcgat 2221 gctagctgat gcgggccctt cgagtggctc cggtgcccgt cagtgggcag agcgcacatc 2281 gcccacagtc cccgagaagt tggggggagg ggtcggcaat tgaaccggtg cctagagaag 2341 gtggcgcggg gtaaactggg aaagtgatgt cgtgtactgg ctccgccttt ttcccgaggg 2401 tgggggagaa ccgtatataa gtgcagtagt cgccgtgaac gttctttttc gcaacgggtt 2461 tgccgccaga acacaggtgt cgtgacgcgg ttccggttaa ggtgaacgcg tgcaggctgg 2521 cgccaccatg gcttctaact ttactcagtt cgttctcgtc gacaatggcg gaactggcga 2581 cgtgactgtc gccccaagca acttcgctaa cgggatcgct gaatggatca gctctaactc 2641 gcgttcacag gcttacaaag taacctgtag cgttcgtcag agctctgcgc agaatcgcaa 2701 atacaccatc aaagtcgagg tgcctaaagg cgcctggcgt tcgtacttaa atatggaact 2761 aaccattcca attttcgcca cgaattccga ctgcgagctt attgttaagg caatgcaagg 2821 tctcctaaaa gatggaaacc cgattccctc agcaatcgca gcaaactccg gcatctacgg 2881 gggatctggt agcggcgctg gatccggaag tatggtgtct aagggcgaag agctgattaa 2941 ggagaacatg cacatgaagc tgtacatgga gggcaccgtg gacaaccatc acttcaagtg 3001 cacatccgag ggcgaaggca agccctacga gggcacccag accatgagaa tcaaggtggt 3061 cgagggcggc cctctcccct tcgccttcga catcctggct actagcttcc tctacggcag 3121 caagaccttc atcaaccaca cccagggcat ccccgacttc ttcaagcagt ccttccctga 3181 gggcttcaca tgggagagag tcaccacata cgaagacggg ggcgtgctga ccgctaccca 3241 ggacaccagc ctccaggacg gctgcctcat ctacaacgtc aagatcagag gggtgaactt 3301 cacatccaac ggccctgtga tgcagaagaa aacactcggc tgggaggcct tcaccgagac 3361 gctgtacccc gctgacggcg gcctggaagg cagaaacgac atggccctga agctcgtggg 3421 cgggagccat ctgatcgcaa acgccaagac cacatataga tccaagaaac ccgctaagaa 3481 cctcaagatg cctggcgtct actatgtgga ctacagactg gaaagaatca aggaggccaa 3541 caacgaaacc tacgtcgagc agcacgaggt ggcagtggcc agatactgcg acctccctag 3601 caaactgggg cacaagctta attctggcgg ccgctctggc atggtgtcta agggcgaaga 3661 gctgattaag gagaacatgc acatgaagct gtacatggag ggcaccgtgg acaaccatca 3721 cttcaagtgc acatccgagg gcgaaggcaa gccctacgag ggcacccaga ccatgagaat 3781 caaggtggtc gagggcggcc ctctcccctt cgccttcgac atcctggcta ctagcttcct 3841 ctacggcagc aagaccttca tcaaccacac ccagggcatc cccgacttct tcaagcagtc 3901 cttccctgag ggcttcacat gggagagagt caccacatac gaagacgggg gcgtgctgac 3961 cgctacccag gacaccagcc tccaggacgg ctgcctcatc tacaacgtca agatcagagg 4021 ggtgaacttc acatccaacg gccctgtgat gcagaagaaa acactcggct gggaggcctt 4081 caccgagacg ctgtaccccg ctgacggcgg cctggaaggc agaaacgaca tggccctgaa 4141 gctcgtgggc gggagccatc tgatcgcaaa cgccaagacc acatatagat ccaagaaacc 4201 cgctaagaac ctcaagatgc ctggcgtcta ctatgtggac tacagactgg aaagaatcaa 4261 ggaggccaac aacgaaacct acgtcgagca gcacgaggtg gcagtggcca gatactgcga 4321 cctccctagc aaactggggc acaagcttaa tggtagcatc gatggtagca tggtgtctaa 4381 gggcgaagag ctgattaagg agaacatgca catgaagctg tacatggagg gcaccgtgga 4441 caaccatcac ttcaagtgca catccgaggg cgaaggcaag ccctacgagg gcacccagac 4501 catgagaatc aaggtggtcg agggcggccc tctccccttc gccttcgaca tcctggctac 4561 tagcttcctc tacggcagca agaccttcat caaccacacc cagggcatcc ccgacttctt 4621 caagcagtcc ttccctgagg gcttcacatg ggagagagtc accacatacg aagacggggg 4681 cgtgctgacc gctacccagg acaccagcct ccaggacggc tgcctcatct acaacgtcaa 4741 gatcagaggg gtgaacttca catccaacgg ccctgtgatg cagaagaaaa cactcggctg 4801 ggaggccttc accgagacgc tgtaccccgc tgacggcggc ctggaaggca gaaacgacat 4861 ggccctgaag ctcgtgggcg ggagccatct gatcgcaaac gccaagacca catatagatc 4921 caagaaaccc gctaagaacc tcaagatgcc tggcgtctac tatgtggact acagactgga 4981 aagaatcaag gaggccaaca acgaaaccta cgtcgagcag cacgaggtgg cagtggccag 5041 atactgcgac ctccctagca aactggggca caagcttaat ctcgagccaa agaaaaagcg 5101 gaaagtgtaa tctagataat caacctctgg attacaaaat ttgtgaaaga ttgactggta 5161 ttcttaacta tgttgctcct tttacgctat gtggatacgc tgctttaatg cctttgtatc 5221 atgctattgc ttcccgtatg gctttcattt tctcctcctt gtataaatcc tggttgctgt 5281 ctctttatga ggagttgtgg cccgttgtca ggcaacgtgg cgtggtgtgc actgtgtttg 5341 ctgacgcaac ccccactggt tggggcattg ccaccacctg tcagctcctt tccgggactt 5401 tcgctttccc cctccctatt gccacggcgg aactcatcgc cgcctgcctt gcccgctgct 5461 ggacaggggc tcggctgttg ggcactgaca attccgtggt gttgtcgggg aaatcatcgt 5521 cctttccttg gctgctcgcc tgtgttgcca cctggattct gcgcgggacg tccttctgct 5581 acgtcccttc ggccctcaat ccagcggacc ttccttcccg cggcctgctg ccggctctgc 5641 ggcctcttcc gcgtcttcgc cttcgccctc agacgagtcg gatctccctt tgggccgcct 5701 ccccgcctga gatcctttaa gaccaatgac ttacaaggca gctgtagatc ttagccactt 5761 tttaaaagaa aaggggggac tggaagggct aattcactcc caacgaagac aagatctgct 5821 ttttgcttgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta 5881 actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgtg 5941 tgcccgtctg ttgtgtgact ctggtaacta gagatccctc agaccctttt agtcagtgtg 6001 gaaaatctct agcagtagta gttcatgtca tcttattatt cagtatttat aacttgcaaa 6061 gaaatgaata tcagagagtg agaggcccgg gttaattaag gaaagggcta gatcattctt 6121 gaagacgaaa gggcctcgtg atacgcctat ttttataggt taatgtcatg ataataatgg 6181 tttcttagac gtcaggtggc acttttcggg gaaatgtgcg cggaacccct atttgtttat 6241 ttttctaaat acattcaaat atgtatccgc tcatgagaca ataaccctga taaatgcttc 6301 aataatattg aaaaaggaag agtatgagta ttcaacattt ccgtgtcgcc cttattccct 6361 tttttgcggc attttgcctt cctgtttttg ctcacccaga aacgctggtg aaagtaaaag 6421 atgctgaaga tcagttgggt gcacgagtgg gttacatcga actggatctc aacagcggta 6481 agatccttga gagttttcgc cccgaagaac gttttccaat gatgagcact tttaaagttc 6541 tgctatgtgg cgcggtatta tcccgtgttg acgccgggca agagcaactc ggtcgccgca 6601 tacactattc tcagaatgac ttggttgagt actcaccagt cacagaaaag catcttacgg 6661 atggcatgac agtaagagaa ttatgcagtg ctgccataac catgagtgat aacactgcgg 6721 ccaacttact tctgacaacg atcggaggac cgaaggagct aaccgctttt ttgcacaaca 6781 tgggggatca tgtaactcgc cttgatcgtt gggaaccgga gctgaatgaa gccataccaa 6841 acgacgagcg tgacaccacg atgcctgtag caatggcaac aacgttgcgc aaactattaa 6901 ctggcgaact acttactcta gcttcccggc aacaattaat agactggatg gaggcggata 6961 aagttgcagg accacttctg cgctcggccc ttccggctgg ctggtttatt gctgataaat 7021 ctggagccgg tgagcgtggg tctcgcggta tcattgcagc actggggcca gatggtaagc 7081 cctcccgtat cgtagttatc tacacgacgg ggagtcaggc aactatggat gaacgaaata 7141 gacagatcgc tgagataggt gcctcactga ttaagcattg gtaactgtca gaccaagttt 7201 actcatatat actttagatt gatttaaaac ttcattttta atttaaaagg atctaggtga 7261 agatcctttt tgataatctc atgaccaaaa tcccttaacg tgagttttcg ttccactgag 7321 cgtcagaccc cgtagaaaag atcaaaggat cttcttgaga tccttttttt ctgcgcgtaa 7381 tctgctgctt gcaaacaaaa aaaccaccgc taccagcggt ggtttgtttg ccggatcaag 7441 agctaccaac tctttttccg aaggtaactg gcttcagcag agcgcagata ccaaatactg 7501 ttcttctagt gtagccgtag ttaggccacc acttcaagaa ctctgtagca ccgcctacat 7561 acctcgctct gctaatcctg ttaccagtgg ctgctgccag tggcgataag tcgtgtctta 7621 ccgggttgga ctcaagacga tagttaccgg ataaggcgca gcggtcgggc tgaacggggg 7681 gttcgtgcac acagcccagc ttggagcgaa cgacctacac cgaactgaga tacctacagc 7741 gtgagctatg agaaagcgcc acgcttcccg aagggagaaa ggcggacagg tatccggtaa 7801 gcggcagggt cggaacagga gagcgcacga gggagcttcc agggggaaac gcctggtatc 7861 tttatagtcc tgtcgggttt cgccacctct gacttgagcg tcgatttttg tgatgctcgt 7921 caggggggcg gagcctatgg aaaaacgcca gcaacgcggc ctttttacgg ttcctggcct 7981 tttgctggcc ttttgctcac atgttctttc ctgcgttatc ccctgattct gtggataacc 8041 gtattaccgc ctttgagtga gctgataccg ctcgccgcag ccgaacgacc gagcgcagcg 8101 agtcagtgag cgaggaagcg gaagagcgcc caatacgcaa accgcctctc cccgcgcgtt 8161 ggccgattca ttaatgcagc aagctcatgg ctgactaatt ttttttattt atgcagaggc 8221 cgaggccgcc tcggcctctg agctattcca gaagtagtga ggaggctttt ttggaggcct 8281 aggcttttgc aaaaagctcc ccgtggcacg acaggtttcc cgactggaaa gcgggcagtg 8341 agcgcaacgc aattaatgtg agttagctca ctcattaggc accccaggct ttacacttta 8401 tgcttccggc tcgtatgttg tgtggaattg tgagcggata acaatttcac acaggaaaca 8461 gctatgacat gattacgaat ttcacaaata aagcattttt ttcactgcat tctagttgtg 8521 gtttgtccaa actcatcaat gtatcttatc atgtctggat caactggata actcaagcta 8581 accaaaatca tcccaaactt cccaccccat accctattac cactgccaat tacctgtggt 8641 ttcatttact ctaaacctgt gattcctctg aattattttc attttaaaga aattgtattt 8701 gttaaatatg tactacaaac ttagtagt //