质粒名称: | pEcgRNA |
---|---|
出品公司: | Addgene |
目录编号: | 166581 |
存储实验室: | Sheng Yang |
载体骨架基本信息 |
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载体名称: | pTargetF |
载体出品公司: | -- |
空载体大小: | -- |
完整质粒大小: | -- |
载体修饰: | -- |
载体类型: | 细菌表达 |
筛选标记: | -- |
载体抗性: | 壮观霉素 |
生长温度: | 37 ℃ |
宿主菌: | ccdB Survival |
拷贝数: | 高拷贝 |
插入基因信息 |
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插入基因名称: | ccdB |
物种来源: | -- |
插入大小: | -- |
基因突变: | -- |
GenBank编号 | -- |
启动子: | -- |
标签/融合蛋白: | -- |
克隆方法: | Ligation Independent 克隆 |
5’克隆位点: | -- |
3’克隆位点: | -- |
5’测序引物 | -- |
3’测序引物 | -- |
文献引用方法 |
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材料和方法部分: | pEcgRNA was a gift from Sheng Yang (Addgene plasmid # 166581 ; http://n2t.net/addgene:166581 ; RRID:Addgene_166581) |
参考文献部分: | A modified pCas/pTargetF system for CRISPR-Cas9-assisted genome editing in Escherichia coli. Li , Q i, Sun, Bingbing, Chen, Jun, Zhang, Yiwen, Jiang, Y u Jiang, Yang, Sheng. Acta Biochimica et Biophysica Sinica, 2021 10.1093/abbs/gmab036 |
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载体序列
LOCUS pEcgRNA 3134 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION CRISPR-Cas9-assisted genome editing in Escherichia coli. ACCESSION . VERSION . KEYWORDS pEcgRNA SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 3134) AUTHORS Li , Q i, Sun, Bingbing, Chen, Jun, Zhang, Yiwen, Jiang, Y u Jiang, Yang, Sheng TITLE A modified pCas/pTargetF system for CRISPR-Cas9-assisted genome editing in Escherichia coli JOURNAL Acta Biochimica et Biophysica Sinica, 2021 REFERENCE 2 (bases 1 to 3134) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..3134 /organism="synthetic DNA construct" /mol_type="other DNA" primer_bind 45..62 /label=L4440 /note="L4440 vector, forward primer" promoter 139..173 /label=J23119(SpeI) promoter /note="bacterial promoter (Registry of Standard Biological Parts BBa_J23119) modified to end with an SpeI site" CDS complement(560..865) /codon_start=1 /gene="ccdB" /product="CcdB, a bacterial toxin that poisons DNA gyrase" /label=ccdB /note="Plasmids containing the ccdB gene cannot be propagated in standard E. coli strains." /translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI" primer_bind complement(662..681) /label=ccdB-fwd /note="ccdB gene, forward primer" misc_RNA 1211..1286 /label=gRNA scaffold /note="guide RNA scaffold for the Streptococcus pyogenes CRISPR/Cas9 system" CDS 1472..2263 /codon_start=1 /gene="aadA" /product="aminoglycoside adenylyltransferase (Murphy, 1985)" /label=SmR /note="confers resistance to spectinomycin and streptomycin" /translation="MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPH SDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAK RELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLF EALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQP VILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK" rep_origin 2437..3025 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind 2926..2945 /label=pBR322ori-F /note="pBR322 origin, forward primer" ORIGIN 1 ttgagtgagc tgataccgct cgccgcagcc gaacgaccga gcgcagcgag tcagtgagcg 61 aggaagcgga agagcgcctg atgcggtatt ttctccttac gcatctgtgc ggtatttcac 121 accgcatatg ctggatcctt gacagctagc tcagtcctag gtataatact agttgagacc 181 cagcagtgaa agataaatga tctgagaccc aggtcgaccg acagccttcc aaatgttctt 241 ctcaaacgga atcgtcgtat ccagcctact cgctattgtc ctcaatgccg tattaaatca 301 taaaaagaaa taagaaaaag aggtgcgagc ctcttttttg tgtgacaaaa taaaaacatc 361 tacctattca tatacgctag tgtcatagtc ctgaaaatca tctgcatcaa gaacaatttc 421 acaactctta tacttttctc ttacaagtcg ttcggcttca tctggatttt cagcctctat 481 acttactaaa cgtgataaag tttctgtaat ttctactgta tcgacctgca gactggctgt 541 gtataaggga gcctgacatt tatattcccc agaacatcag gttaatggcg tttttgatgt 601 cattttcgcg gtggctgaga tcagccactt cttccccgat aacggagacc ggcacactgg 661 ccatatcggt ggtcatcatg cgccagcttt catccccgat atgcaccacc gggtaaagtt 721 cacgggagac tttatctgac agcagacgtg cactggccag ggggatcacc atccgtcgcc 781 cgggcgtgtc aataatatca ctctgtacat ccacaaacag acgataacgg ctctctcttt 841 tataggtgta aaccttaaac tgcatttcac cagcccctgt tctcgtcagc aaaagagccg 901 ttcatttcaa taaaccgggc gacctcagcc atcccttcct gattttccgc tttccagcgt 961 tcggcacgca gacgacgggc ttcattctgc atggttgtgc ttaccagacc ggagatattg 1021 acatcatata tgccttgagc aactgatagc tgtcgctgtc aactgtcact gtaatacgct 1081 gcttcatagc atacctcttt ttgacatact tcgggtatac atatcagtat atattcttat 1141 accgcaaaaa tcagcgcgca aatacgcata ctgttatctg gcttttagta agccggatcc 1201 ctgggtctcg gttttagagc tagaaatagc aagttaaaat aaggctagtc cgttatcaac 1261 ttgaaaaagt ggcaccgagt cggtgctttt tttgaattct ctagagtcga cctgcagaag 1321 cttagatcta ttaccctgtt atccctactc gagttcatgt gcagctccat aagcaaaagg 1381 ggatgataag tttatcacca ccgactattt gcaacagtgc cgttgatcgt gctatgatcg 1441 actgatgtca tcagcggtgg agtgcaatgt catgagggaa gcggtgatcg ccgaagtatc 1501 gactcaacta tcagaggtag ttggcgtcat cgagcgccat ctcgaaccga cgttgctggc 1561 cgtacatttg tacggctccg cagtggatgg cggcctgaag ccacacagtg atattgattt 1621 gctggttacg gtgaccgtaa ggcttgatga aacaacgcgg cgagctttga tcaacgacct 1681 tttggaaact tcggcttccc ctggagagag cgagattctc cgcgctgtag aagtcaccat 1741 tgttgtgcac gacgacatca ttccgtggcg ttatccagct aagcgcgaac tgcaatttgg 1801 agaatggcag cgcaatgaca ttcttgcagg tatcttcgag ccagccacga tcgacattga 1861 tctggctatc ttgctgacaa aagcaagaga acatagcgtt gccttggtag gtccagcggc 1921 ggaggaactc tttgatccgg ttcctgaaca ggatctattt gaggcgctaa atgaaacctt 1981 aacgctatgg aactcgccgc ccgactgggc tggcgatgag cgaaatgtag tgcttacgtt 2041 gtcccgcatt tggtacagcg cagtaaccgg caaaatcgcg ccgaaggatg tcgctgccga 2101 ctgggcaatg gagcgcctgc cggcccagta tcagcccgtc atacttgaag ctagacaggc 2161 ttatcttgga caagaagaag atcgcttggc ctcgcgcgca gatcagttgg aagaatttgt 2221 ccactacgtg aaaggcgaga tcaccaaggt agtcggcaaa taagatgccg ctcgccagtc 2281 gattggctga gctcataagt tcctattccg aagttccgcg aacgcgtaaa ggatctaggt 2341 gaagatcctt tttgataatc tcatgaccaa aatcccttaa cgtgagtttt cgttccactg 2401 agcgtcagac cccgtagaaa agatcaaagg atcttcttga gatccttttt ttctgcgcgt 2461 aatctgctgc ttgcaaacaa aaaaaccacc gctaccagcg gtggtttgtt tgccggatca 2521 agagctacca actctttttc cgaaggtaac tggcttcagc agagcgcaga taccaaatac 2581 tgtccttcta gtgtagccgt agttaggcca ccacttcaag aactctgtag caccgcctac 2641 atacctcgct ctgctaatcc tgttaccagt ggctgctgcc agtggcgata agtcgtgtct 2701 taccgggttg gactcaagac gatagttacc ggataaggcg cagcggtcgg gctgaacggg 2761 gggttcgtgc acacagccca gcttggagcg aacgacctac accgaactga gatacctaca 2821 gcgtgagcta tgagaaagcg ccacgcttcc cgaagggaga aaggcggaca ggtatccggt 2881 aagcggcagg gtcggaacag gagagcgcac gagggagctt ccagggggaa acgcctggta 2941 tctttatagt cctgtcgggt ttcgccacct ctgacttgag cgtcgatttt tgtgatgctc 3001 gtcagggggg cggagcctat ggaaaaacgc cagcaacgcg gcctttttac ggttcctggc 3061 cttttgctgg ccttttgctc acatgttctt tcctgcgtta tcccctgatt ctgtggataa 3121 ccgtattacc gcct //
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