质粒名称: | pDYSCKO |
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出品公司: | Addgene |
目录编号: | 120263 |
存储实验室: | Christian Landry |
载体骨架基本信息 |
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载体名称: | p426 |
空载体大小: | 5500bp |
完整质粒大小: | 6459 bp |
载体类型: | CRISPR, Synthetic Biology |
筛选标记: | URA3 ; Canavanine (after mutagenesis) |
载体抗性: | 氨苄霉素 |
生长温度: | 37 ℃ |
宿主菌: | DH5a |
拷贝数: | 高拷贝 |
插入基因信息 |
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插入基因名称: | DYSCKO cassette |
物种来源: | S. cerevisiae (budding yeast) |
启动子: | SNR52 |
克隆方法: | Gibson Cloning |
5’测序引物 | GCGCCGCTACAGGGCGCGT |
3’测序引物 | caggaaacagctatgac |
文献引用方法 |
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材料和方法部分: | pDYSCKO was a gift from Christian Landry (Addgene plasmid # 120263 ; http://n2t.net/addgene:120263 ; RRID:Addgene_120263) |
参考文献部分: | Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast. Despres PC, Dube AK, Nielly-Thibault L, Yachie N, Landry CR. G3 (Bethesda). 2018 Oct 3;8(10):3163-3171. doi: 10.1534/g3.118.200461. 10.1534/g3.118.200461 PubMed 30097473 |
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载体基本信息
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载体序列
LOCUS pDYSCKO 6459 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION Empty backbone for cloning any gRNA to be used with the canavanine co-selection system. ACCESSION . VERSION . KEYWORDS pDYSCKO SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 6459) AUTHORS Despres PC, Dube AK, Nielly-Thibault L, Yachie N, Landry CR TITLE Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast. JOURNAL G3 (Bethesda). 2018 Oct 3;8(10):3163-3171. doi: 10.1534/g3.118.200461. PUBMED 30097473 REFERENCE 2 (bases 1 to 6459) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.biofeng.com FEATURES Location/Qualifiers source 1..6459 /organism="synthetic DNA construct" /mol_type="other DNA" rep_origin 69..1411 /label=2u ori /note="yeast 2u plasmid origin of replication" protein_bind 401..448 /label=FRT /bound_moiety="FLP recombinase from the Saccharomyces cerevisiae 2u plasmid" /note="FLP-mediated recombination occurs in the 8-bp core sequence TCTAGAAA (Turan and Bode, 2011)." promoter 1438..1542 /gene="bla" /label=AmpR promoter CDS 1543..2403 /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind complement(1761..1780) /label=Amp-R /note="Ampicillin resistance gene, reverse primer" rep_origin 2574..3161 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind 3062..3081 /label=pBR322ori-F /note="pBR322 origin, forward primer" primer_bind 3315..3332 /label=L4440 /note="L4440 vector, forward primer" protein_bind 3449..3470 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." promoter 3485..3515 /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 3523..3539 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." primer_bind 3528..3550 /label=M13/pUC Reverse /note="In lacZ gene" primer_bind 3547..3563 /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind 3547..3563 /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind 3582..3602 /label=T3 /note="T3 promoter, forward primer" promoter 3584..3602 /label=T3 promoter /note="promoter for bacteriophage T3 RNA polymerase" promoter 3620..3888 /label=SNR52 promoter /note="promoter for the S. cerevisiae small nucleolar RNA gene SNR52" misc_RNA 3909..3983 /label=gRNA scaffold /note="guide RNA scaffold for the Streptococcus pyogenes CRISPR/Cas9 system" terminator 3988..4007 /label=SUP4 terminator /note="transcription terminator for the S. cerevisiae SUP4 tRNA gene" terminator 4013..4260 /gene="S. cerevisiae CYC1" /label=CYC1 terminator /note="transcription terminator for CYC1" terminator 4266..4285 /label=SUP4 terminator /note="transcription terminator for the S. cerevisiae SUP4 tRNA gene" misc_RNA complement(4290..4364) /label=gRNA scaffold /note="guide RNA scaffold for the Streptococcus pyogenes CRISPR/Cas9 system" promoter complement(4384..4652) /label=SNR52 promoter /note="promoter for the S. cerevisiae small nucleolar RNA gene SNR52" rep_origin 4661..5116 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(4748..4767) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 4958..4979 /label=F1ori-F /note="F1 origin, forward primer" CDS complement(5247..6050) /codon_start=1 /gene="S. cerevisiae URA3" /product="orotidine-5'-phosphate decarboxylase, required for uracil biosynthesis" /label=URA3 /note="yeast auxotrophic marker, counterselectable with 5-fluoroorotic acid (5-FOA)" /translation="MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELL ELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQ YSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGE YTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDD VVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRCGQQN" promoter complement(6051..6266) /gene="S. cerevisiae URA3" /label=URA3 promoter primer_bind complement(6290..6309) /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" primer_bind 6409..6431 /label=pGEX 3' /note="pGEX vectors, reverse primer" ORIGIN 1 gacgaaaggg cctcggcatg cgcctatttt tataggttaa tgtcatgata ataatggttt 61 cttagtatga tccaatatca aaggaaatga tagcattgaa ggatgagact aatccaattg 121 aggagtggca gcatatagaa cagctaaagg gtagtgctga aggaagcata cgataccccg 181 catggaatgg gataatatca caggaggtac tagactacct ttcatcctac ataaatagac 241 gcatataagt acgcatttaa gcataaacac gcactatgcc gttcttctca tgtatatata 301 tatacaggca acacgcagat ataggtgcga cgtgaacagt gagctgtatg tgcgcagctc 361 gcgttgcatt ttcggaagcg ctcgttttcg gaaacgcttt gaagttccta ttccgaagtt 421 cctattctct agaaagtata ggaacttcag agcgcttttg aaaaccaaaa gcgctctgaa 481 gacgcacttt caaaaaacca aaaacgcacc ggactgtaac gagctactaa aatattgcga 541 ataccgcttc cacaaacatt gctcaaaagt atctctttgc tatatatctc tgtgctatat 601 ccctatataa cctacccatc cacctttcgc tccttgaact tgcatctaaa ctcgacctct 661 acatttttta tgtttatctc tagtattact ctttagacaa aaaaattgta gtaagaacta 721 ttcatagagt gaatcgaaaa caatacgaaa atgtaaacat ttcctatacg tagtatatag 781 agacaaaata gaagaaaccg ttcataattt tctgaccaat gaagaatcat caacgctatc 841 actttctgtt cacaaagtat gcgcaatcca catcggtata gaatataatc ggggatgcct 901 ttatcttgaa aaaatgcacc cgcagcttcg ctagtaatca gtaaacgcgg gaagtggagt 961 caggcttttt ttatggaaga gaaaatagac accaaagtag ccttcttcta accttaacgg 1021 acctacagtg caaaaagtta tcaagagact gcattataga gcgcacaaag gagaaaaaaa 1081 gtaatctaag atgctttgtt agaaaaatag cgctctcggg atgcattttt gtagaacaaa 1141 aaagaagtat agattctttg ttggtaaaat agcgctctcg cgttgcattt ctgttctgta 1201 aaaatgcagc tcagattctt tgtttgaaaa attagcgctc tcgcgttgca tttttgtttt 1261 acaaaaatga agcacagatt cttcgttggt aaaatagcgc tttcgcgttg catttctgtt 1321 ctgtaaaaat gcagctcaga ttctttgttt gaaaaattag cgctctcgcg ttgcattttt 1381 gttctacaaa atgaagcaca gatgcttcgt tcaggtggca cttttcgggg aaatgtgcgc 1441 ggaaccccta tttgtttatt tttctaaata cattcaaata tgtatccgct catgagacaa 1501 taaccctgat aaatgcttca ataatattga aaaaggaaga gtatgagtat tcaacatttc 1561 cgtgtcgccc ttattccctt ttttgcggca ttttgccttc ctgtttttgc tcacccagaa 1621 acgctggtga aagtaaaaga tgctgaagat cagttgggtg cacgagtggg ttacatcgaa 1681 ctggatctca acagcggtaa gatccttgag agttttcgcc ccgaagaacg ttttccaatg 1741 atgagcactt ttaaagttct gctatgtggc gcggtattat cccgtattga cgccgggcaa 1801 gagcaactcg gtcgccgcat acactattct cagaatgact tggttgagta ctcaccagtc 1861 acagaaaagc atcttacgga tggcatgaca gtaagagaat tatgcagtgc tgccataacc 1921 atgagtgata acactgcggc caacttactt ctgacaacga tcggaggacc gaaggagcta 1981 accgcttttt tgcacaacat gggggatcat gtaactcgcc ttgatcgttg ggaaccggag 2041 ctgaatgaag ccataccaaa cgacgagcgt gacaccacga tgcctgtagc aatggcaaca 2101 acgttgcgca aactattaac tggcgaacta cttactctag cttcccggca acaattaata 2161 gactggatgg aggcggataa agttgcagga ccacttctgc gctcggccct tccggctggc 2221 tggtttattg ctgataaatc tggagccggt gagcgtgggt cccgcggtat cattgcagca 2281 ctggggccag atggtaagcc ctcccgtatc gtagttatct acacgacggg gagtcaggca 2341 actatggatg aacgaaatag acagatcgct gagataggtg cctcactgat taagcattgg 2401 taactgtcag accaagttta ctcatatata ctttagattg atttaaaact tcatttttaa 2461 tttaaaagga tctaggtgaa gatccttttt gataatctca tgaccaaaat cccttaacgt 2521 gagttttcgt tccactgagc gtcagacccc gtagaaaaga tcaaaggatc ttcttgagat 2581 cctttttttc tgcgcgtaat ctgctgcttg caaacaaaaa accaccgcta ccagcggtgg 2641 tttgtttgcc ggatcaagag ctaccaactc tttttccgaa ggtaactggc ttcagcagag 2701 cgcagatacc aaatactgtt cttctagtgt agccgtagtt aggccaccac ttcaagaact 2761 ctgtagcacc gcctacatac ctcgctctgc taatcctgtt accagtggct gctgccagtg 2821 gcgataagtc gtgtcttacc gggttggact caagacgata gttaccggat aaggcgcagc 2881 ggtcgggctg aacggggggt tcgtgcacac agcccagctt ggagcgaacg acctacaccg 2941 aactgagata cctacagcgt gagctatgag aaagcgccac gcttcccgaa gggagaaagg 3001 cggacaggta tccggtaagc ggcagggtcg gaacaggaga gcgcacgagg gagcttccag 3061 ggggaaacgc ctggtatctt tatagtcctg tcgggtttcg ccacctctga cttgagcgtc 3121 gatttttgtg atgctcgtca ggggggcgga gcctatggaa aaacgccagc aacgcggcct 3181 ttttacggtt cctggccttt tgctggcctt ttgctcacat gttctttcct gcgttatccc 3241 ctgattctgt ggataaccgt attaccgcct ttgagtgagc tgataccgct cgccgcagcc 3301 gaacgaccga gcgcagcgag tcagtgagcg aggaagcgga agagcgccca atacgcaaac 3361 cgcctctccc cgcgcgttgg ccgattcatt aatgcagctg gcacgacagg tttcccgact 3421 ggaaagcggg cagtgagcgc aacgcaatta atgtgagtta gctcactcat taggcacccc 3481 aggctttaca ctttatgctt ccggctcgta tgttgtgtgg aattgtgagc ggataacaat 3541 ttcacacagg aaacagctat gaccatgatt acgccaagcg cgcaattaac cctcactaaa 3601 gggaacaaaa gctggagctt ctttgaaaag ataatgtatg attatgcttt cactcatatt 3661 tatacagaaa cttgatgttt tctttcgagt atatacaagg tgattacatg tacgtttgaa 3721 gtacaactct agattttgta gtgccctctt gggctagcgg taaaggtgcg cattttttca 3781 caccctacaa tgttctgttc aaaagatttt ggtcaaacgc tgtagaagtg aaagttggtg 3841 cgcatgtttc ggcgttcgaa acttctccgc agtgaaagat aaatgatcat aacggaatcc 3901 aactgggcgt tttagagcta gaaatagcaa gttaaaataa ggctagtccg ttatcaactt 3961 gaaaaagtgg caccgagtcg gtggtgcttt ttttgttttt tatgtcttcg agtcatgtaa 4021 ttagttatgt cacgcttacg ttcacgccct ccccccacat ccgctctaac cgaaaaggaa 4081 ggagttagac aacctgaagt ctaggtccct atttattttt ttatagttat gttagtatta 4141 agaacgttat ttatatttca aatttttctt ttttttctgt acagacgcgt gtacgcatgt 4201 aacattatac tgaaaacctt gcttgagaag gttttgggac gctcgaaggc tttaatttgc 4261 ctcgaagaca taaaaaacaa aaaaagcacc accgactcgg tgccactttt tcaagttgat 4321 aacggactag ccttatttta acttgctatt tctagctcta aaactgagac cagatctggt 4381 ctcgatcatt tatctttcac tgcggagaag tttcgaacgc cgaaacatgc gcaccaactt 4441 tcacttctac agcgtttgac caaaatcttt tgaacagaac attgtagggt gtgaaaaaat 4501 gcgcaccttt accgctagcc caagagggca ctacaaaatc tagagttgta cttcaaacgt 4561 acatgtaatc accttgtata tactcgaaag aaaacatcaa gtttctgtat aaatatgagt 4621 gaaagcataa tcatacatta tcttttcaaa gaatggcgcg acgcgccctg tagcggcgca 4681 ttaagcgcgg cgggtgtggt ggttacgcgc agcgtgaccg ctacacttgc cagcgcccta 4741 gcgcccgctc ctttcgcttt cttcccttcc tttctcgcca cgttcgccgg ctttccccgt 4801 caagctctaa atcgggggct ccctttaggg ttccgattta gtgctttacg gcacctcgac 4861 cccaaaaaac ttgattaggg tgatggttca cgtagtgggc catcgccctg atagacggtt 4921 tttcgccctt tgacgttgga gtccacgttc tttaatagtg gactcttgtt ccaaactgga 4981 acaacactca accctatctc ggtctattct tttgatttat aagggatttt gccgatttcg 5041 gcctattggt taaaaaatga gctgatttaa caaaaattta acgcgaattt taacaaaata 5101 ttaacgctta caatttcctg atgcggtatt ttctccttac gcatctgtgc ggtatttcac 5161 accgcatagg gtaataactg atataattaa attgaagctc taatttgtga gtttagtata 5221 catgcattta cttataatac agttttttag ttttgctggc cgcatcttct caaatatgct 5281 tcccagcctg cttttctgta acgttcaccc tctaccttag catcccttcc ctttgcaaat 5341 agtcctcttc caacaataat aatgtcagat cctgtagata ccacatcatc cacggttcta 5401 tactgttgac ccaatgcgtc tcccttgtca tctaaaccca caccgggtgt cataatcaac 5461 caatcgtaac cttcatctct tccacccatg tctctttgag caataaagcc gataacaaaa 5521 tctttgtcgc tcttcgcaat gtcaacagta cccttagtat attctccagt agatagggag 5581 cccttgcatg acaattctgc taacatcaaa aggcctctag gttcctttgt tacttcttct 5641 gccgcctgct tcaaaccgct aacaatacct gggcccacca caccgtgtgc attcgtaatg 5701 tctgcccatt ctgctattct gtatacaccc gcagagtact gcaatttgac tgtattacca 5761 atgtcagcaa attttctgtc ttcgaagagt aaaaaattgt acttggcgga taatgccttt 5821 agcggcttaa ctgtgccctc catggaaaaa tcagtcaaga tatccacatg tgtttttagt 5881 aaacaaattt tgggacctaa tgcttcaact aactccagta attccttggt ggtacgaaca 5941 tccaatgaag cacacaagtt tgtttgcttt tcgtgcatga tattaaatag cttggcagca 6001 acaggactag gatgagtagc agcacgttcc ttatatgtag ctttcgacat gatttatctt 6061 cgtttcctgc aggtttttgt tctgtgcagt tgggttaaga atactgggca atttcatgtt 6121 tcttcaacac tacatatgcg tatatatacc aatctaagtc tgtgctcctt ccttcgttct 6181 tccttctgtt cggagattac cgaatcaaaa aaatttcaag gaaaccgaaa tcaaaaaaaa 6241 gaataaaaaa aaaatgatga attgaaaagg tggtatggtg cactctcagt acaatctgct 6301 ctgatgccgc atagttaagc cagccccgac acccgccaac acccgctgac gcgccctgac 6361 gggcttgtct gctcccggca tccgcttaca gacaagctgt gaccgtctcc gggagctgca 6421 tgtgtcagag gttttcaccg tcatcaccga aacgcgcga //
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