质粒名称: | pBA904 |
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出品公司: | Addgene |
目录编号: | 122238 |
存储实验室: | Jonathan Weissman |
载体骨架基本信息 |
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载体名称: | pU6-sgRNA EF1Alpha-puro-T2A-BFP (Addgene, #60955) |
完整质粒大小: | 8914 bp |
载体修饰: | 使用BlpI和XhoI位点插入修饰的sgRNA(在恒定区/tracr的茎环2中具有捕获序列1)。 |
载体类型: | 哺乳细胞表达,慢病毒,CRISPR |
筛选标记: | 嘌呤霉素,BFP |
载体抗性: | 氨苄霉素100 μg/mL |
生长温度: | 37 ℃ |
宿主菌: | NEB Stable |
拷贝数: | 低拷贝 |
插入基因信息 |
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插入基因名称: | sgRNA with cs1 in stem loop 2 of the constant region |
物种来源: | Synthetic |
克隆方法: | 限制性内切酶 |
5’克隆位点: | BlpI (未破坏) |
3’克隆位点: | XhoI(未破坏) |
5’测序引物 | cagcacaaaaggaaactcacc |
文献引用方法 |
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材料和方法部分: | pBA904 was a gift from Jonathan Weissman (Addgene plasmid # 122238 ; http://n2t.net/addgene:122238 ; RRID:Addgene_122238) |
参考文献部分: | Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing. Replogle JM, Norman TM, Xu A, Hussmann JA, Chen J, Cogan JZ, Meer EJ, Terry JM, Riordan DP, Srinivas N, Fiddes IT, Arthur JG, Alvarado LJ, Pfeiffer KA, Mikkelsen TS, Weissman JS, Adamson B. Nat Biotechnol. 2020 Aug;38(8):954-961. doi: 10.1038/s41587-020-0470-y. Epub 2020 Mar 30. 10.1038/s41587-020-0470-y PubMed 32231336 |
买家导航
载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS pBA904 8903 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION Lentiviral CRISPR guide vector expressing a eGFP-NT2 sgRNA with cs1 incorporated in the loop of the sgRNA constant region.. ACCESSION . VERSION . KEYWORDS pBA904 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8903) TITLE Direct capture of CRISPR guides enables scalable, multiplexed, and multi-omic Perturb-seq JOURNAL Unpublished REFERENCE 2 (bases 1 to 8903) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..8903 /organism="synthetic DNA construct" /mol_type="other DNA" primer_bind complement(47..66) /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" enhancer 238..617 /label=CMV enhancer /note="human cytomegalovirus immediate early enhancer" promoter 619..817 /label=CMV promoter /note="human cytomegalovirus (CMV) immediate early promoter" primer_bind 772..792 /label=CMV-F /note="Human CMV immediate early promoter, forward primer" LTR 835..1015 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" misc_feature 1062..1187 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" misc_feature 1684..1917 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." CDS 2102..2146 /codon_start=1 /product="antigenic peptide corresponding to amino acids 655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik et al., 2013)" /label=gp41 peptide /note="recognized by the 2H10 single-chain llama nanobody" /translation="KNEQELLELDKWASL" misc_feature 2444..2561 /label=cPPT/CTS /note="central polypurine tract and central termination sequence of HIV-1" protein_bind 2814..2847 /label=loxP /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GCATACAT)." primer_bind 2851..2871 /label=mU6-F /note="Mouse U6 promoter, forward primer" promoter 3142..3353 /label=EF-1-alpha core promoter /note="core promoter for human elongation factor EF-1-alpha" intron 3354..4292 /label=EF-1-alpha intron A /note="intron upstream of the start codon of human EF-1-alpha" primer_bind 4249..4269 /label=EF1a-F /note="Human elongation factor-1a promoter, forward primer" CDS 4313..4909 /codon_start=1 /gene="pac from Streptomyces alboniger" /product="puromycin N-acetyltransferase" /label=PuroR /note="confers resistance to puromycin" /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA" primer_bind complement(4313..4332) /label=Puro-R /note="Puromycin resistance gene, reverse primer. Also called puro-variant-R" primer_bind 4809..4829 /label=Puro-F /note="Puromycin resistance gene, forward primer" CDS 4919..4972 /codon_start=1 /product="2A peptide from Thosea asigna virus capsid protein" /label=T2A /note="Eukaryotic ribosomes fail to insert a peptide bond between the Gly and Pro residues, yielding separate polypeptides." /translation="EGRGSLLTCGDVEENPGP" CDS 4985..5683 /codon_start=1 /product="monomeric blue fluorescent protein" /label=TagBFP /note="mammalian codon-optimized" /translation="SELIKENMHMKLYMEGTVDNHHFKCTSEGEGKPYEGTQTMRIKVV EGGPLPFAFDILATSFLYGSKTFINHTQGIPDFFKQSFPEGFTWERVTTYEDGGVLTAT QDTSLQDGCLIYNVKIRGVNFTSNGPVMQKKTLGWEAFTETLYPADGGLEGRNDMALKL VGGSHLIANIKTTYRSKKPAKNLKMPGVYYVDYRLERIKEANNETYVEQHEVAVARYCD LPSKLGHKLN" protein_bind 5703..5736 /label=loxP /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GCATACAT)." misc_feature 5792..6380 /label=WPRE /note="woodchuck hepatitis virus posttranscriptional regulatory element" primer_bind complement(5845..5865) /label=WPRE-R /note="WPRE, reverse primer" CDS complement(6263..6274) /codon_start=1 /product="Factor Xa recognition and cleavage site" /label=Factor Xa site /translation="IEGR" primer_bind complement(6383..6399) /label=KS primer /note="common sequencing primer, one of multiple similar variants" primer_bind complement(6384..6400) /label=pBluescriptKS /note="For pBluescript vector" LTR 6909..7089 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" rep_origin complement(7151..7739) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(7231..7250) /label=pBR322ori-F /note="pBR322 origin, forward primer" CDS complement(7910..8770) /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind 8533..8552 /label=Amp-R /note="Ampicillin resistance gene, reverse primer" promoter complement(8771..8875) /gene="bla" /label=AmpR promoter ORIGIN 1 gtcgacggat cgggagatct cccgatcccc tatggtgcac tctcagtaca atctgctctg 61 atgccgcata gttaagccag tatctgctcc ctgcttgtgt gttggaggtc gctgagtagt 121 gcgcgagcaa aatttaagct acaacaaggc aaggcttgac cgacaattgc atgaagaatc 181 tgcttagggt taggcgtttt gcgctgcttc gcgatgtacg ggccagatat acgcgttgac 241 attgattatt gactagttat taatagtaat caattacggg gtcattagtt catagcccat 301 atatggagtt ccgcgttaca taacttacgg taaatggccc gcctggctga ccgcccaacg 361 acccccgccc attgacgtca ataatgacgt atgttcccat agtaacgcca atagggactt 421 tccattgacg tcaatgggtg gagtatttac ggtaaactgc ccacttggca gtacatcaag 481 tgtatcatat gccaagtacg ccccctattg acgtcaatga cggtaaatgg cccgcctggc 541 attatgccca gtacatgacc ttatgggact ttcctacttg gcagtacatc tacgtattag 601 tcatcgctat taccatggtg atgcggtttt ggcagtacat caatgggcgt ggatagcggt 661 ttgactcacg gggatttcca agtctccacc ccattgacgt caatgggagt ttgttttggc 721 accaaaatca acgggacttt ccaaaatgtc gtaacaactc cgccccattg acgcaaatgg 781 gcggtaggcg tgtacggtgg gaggtctata taagcagcgc gttttgcctg tactgggtct 841 ctctggttag accagatctg agcctgggag ctctctggct aactagggaa cccactgctt 901 aagcctcaat aaagcttgcc ttgagtgctt caagtagtgt gtgcccgtct gttgtgtgac 961 tctggtaact agagatccct cagacccttt tagtcagtgt ggaaaatctc tagcagtggc 1021 gcccgaacag ggacttgaaa gcgaaaggga aaccagagga gctctctcga cgcaggactc 1081 ggcttgctga agcgcgcacg gcaagaggcg aggggcggcg actggtgagt acgccaaaaa 1141 ttttgactag cggaggctag aaggagagag atgggtgcga gagcgtcagt attaagcggg 1201 ggagaattag atcgcgatgg gaaaaaattc ggttaaggcc agggggaaag aaaaaatata 1261 aattaaaaca tatagtatgg gcaagcaggg agctagaacg attcgcagtt aatcctggcc 1321 tgttagaaac atcagaaggc tgtagacaaa tactgggaca gctacaacca tcccttcaga 1381 caggatcaga agaacttaga tcattatata atacagtagc aaccctctat tgtgtgcatc 1441 aaaggataga gataaaagac accaaggaag ctttagacaa gatagaggaa gagcaaaaca 1501 aaagtaagac caccgcacag caagcggccg gccgctgatc ttcagacctg gaggaggaga 1561 tatgagggac aattggagaa gtgaattata taaatataaa gtagtaaaaa ttgaaccatt 1621 aggagtagca cccaccaagg caaagagaag agtggtgcag agagaaaaaa gagcagtggg 1681 aataggagct ttgttccttg ggttcttggg agcagcagga agcactatgg gcgcagcgtc 1741 aatgacgctg acggtacagg ccagacaatt attgtctggt atagtgcagc agcagaacaa 1801 tttgctgagg gctattgagg cgcaacagca tctgttgcaa ctcacagtct ggggcatcaa 1861 gcagctccag gcaagaatcc tggctgtgga aagataccta aaggatcaac agctcctggg 1921 gatttggggt tgctctggaa aactcatttg caccactgct gtgccttgga atgctagttg 1981 gagtaataaa tctctggaac agatttggaa tcacacgacc tggatggagt gggacagaga 2041 aattaacaat tacacaagct taatacactc cttaattgaa gaatcgcaaa accagcaaga 2101 aaagaatgaa caagaattat tggaattaga taaatgggca agtttgtgga attggtttaa 2161 cataacaaat tggctgtggt atataaaatt attcataatg atagtaggag gcttggtagg 2221 tttaagaata gtttttgctg tactttctat agtgaataga gttaggcagg gatattcacc 2281 attatcgttt cagacccacc tcccaacccc gaggggaccc gacaggcccg aaggaataga 2341 agaagaaggt ggagagagag acagagacag atccattcga ttagtgaacg gatcggcact 2401 gcgtgcgcca attctgcaga caaatggcag tattcatcca caattttaaa agaaaagggg 2461 ggattggggg gtacagtgca ggggaaagaa tagtagacat aatagcaaca gacatacaaa 2521 ctaaagaatt acaaaaacaa attacaaaaa ttcaaaattt tcgggtttat tacagggaca 2581 gcagagatcc agtttggtta gtaccgggcc cgctctagag atccgacgcg ccatctctag 2641 gcccgcgccg gccccctcgc acggacttgt gggagaagct cggctactcc cctgccccgg 2701 ttaatttgca tataatattt cctagtaact atagaggctt aatgtgcgat aaaagacaga 2761 taatctgttc tttttaatac tagctacatt ttacatgata ggcttggatt tctataactt 2821 cgtatagcat acattatacg aagttataaa cagcacaaaa ggaaactcac cctaactgta 2881 aagtaattgt gtgttttgag actataagta tcccttggag aaccaccttg ttggaccagg 2941 atgggcacca cccgtttaag agctaagctg gaaacagcat agcaagttta aataaggcta 3001 gtccgttatc aacttggccg ctttaaggcc ggtcctagca aggccaagtg gcaccgagtc 3061 ggtgcttttt ttctcgagta ctaggatcca ttaggcggcc gcgtggataa ccgtattacc 3121 gccatgcatg tgcccgtcag tgggcagagc gcacatcgcc cacagtcccc gagaagttgg 3181 ggggaggggt cggcaattga accggtgcct agagaaggtg gcgcggggta aactgggaaa 3241 gtgatgtcgt gtactggctc cgcctttttc ccgagggtgg gggagaaccg tatataagtg 3301 cagtagtcgc cgtgaacgtt ctttttcgca acgggtttgc cgccagaaca caggtaagtg 3361 ccgtgtgtgg ttcccgcggg cctggcctct ttacgggtta tggcccttgc gtgccttgaa 3421 ttacttccac ctggctgcag tacgtgattc ttgatcccga gcttcgggtt ggaagtgggt 3481 gggagagttc gaggccttgc gcttaaggag ccccttcgcc tcgtgcttga gttgaggcct 3541 ggcctgggcg ctggggccgc cgcgtgcgaa tctggtggca ccttcgcgcc tgtctcgctg 3601 ctttcgataa gtctctagcc atttaaaatt tttgatgacc tgctgcgacg ctttttttct 3661 ggcaagatag tcttgtaaat gcgggccaag atctgcacac tggtatttcg gtttttgggg 3721 ccgcgggcgg cgacggggcc cgtgcgtccc agcgcacatg ttcggcgagg cggggcctgc 3781 gagcgcggcc accgagaatc ggacgggggt agtctcaagc tggccggcct gctctggtgc 3841 ctggcctcgc gccgccgtgt atcgccccgc cctgggcggc aaggctggcc cggtcggcac 3901 cagttgcgtg agcggaaaga tggccgcttc ccggccctgc tgcagggagc tcaaaatgga 3961 ggacgcggcg ctcgggagag cgggcgggtg agtcacccac acaaaggaaa agggcctttc 4021 cgtcctcagc cgtcgcttca tgtgactcca cggagtaccg ggcgccgtcc aggcacctcg 4081 attagttctc gcgcttttgg agtacgtcgt ctttaggttg gggggagggg ttttatgcga 4141 tggagtttcc ccacactgag tgggtggaga ctgaagttag gccagcttgg cacttgatgt 4201 aattctcctt ggaatttgcc ctttttgagt ttggatcttg gttcattctc aagcctcaga 4261 cagtggttca aagttttttt cttccatttc aggtgtcgtg agctagccca ccatgaccga 4321 gtacaagccc acggtgcgcc tcgccacccg cgacgacgtc ccccgggccg tacgcaccct 4381 cgccgccgcg ttcgccgact accccgccac gcgccacacc gtcgacccgg accgccacat 4441 cgagcgggtc accgagctgc aagaactctt cctcacgcgc gtcgggctcg acatcggcaa 4501 ggtgtgggtc gcggacgacg gcgccgcggt ggcggtctgg accacgccgg agagcgtcga 4561 agcgggggcg gtgttcgccg agatcggccc gcgcatggcc gagttgagcg gttcccggct 4621 ggccgcgcag caacagatgg aaggcctcct ggcgccgcac cggcccaagg agcccgcgtg 4681 gttcctggcc accgtcggcg tctcgcccga ccaccagggc aagggtctgg gcagcgccgt 4741 cgtgctcccc ggagtggagg cggccgagcg cgccggggtg cccgccttcc tggagacctc 4801 cgcgccccgc aacctcccct tctacgagcg gctcggcttc accgtcaccg ccgacgtcga 4861 ggtgcccgaa ggaccgcgca cctggtgcat gacccgcaag cccggtgccg gatcgggaga 4921 gggcagagga agtctgctaa catgcggtga cgtcgaggag aatcctggcc caccggtcgc 4981 caccagcgag ctgattaagg agaacatgca catgaagctg tacatggagg gcaccgtgga 5041 caaccatcac ttcaagtgca catccgaggg cgaaggcaag ccctacgagg gcacccagac 5101 catgagaatc aaggtggtcg agggcggccc tctccccttc gccttcgaca tcctggctac 5161 tagcttcctc tacggcagca agaccttcat caaccacacc cagggcatcc ccgacttctt 5221 caagcagtcc ttccctgagg gcttcacatg ggagagagtc accacatacg aagacggggg 5281 cgtgctgacc gctacccagg acaccagcct ccaggacggc tgcctcatct acaacgtcaa 5341 gatcagaggg gtgaacttca catccaacgg ccctgtgatg cagaagaaaa cactcggctg 5401 ggaggccttc accgagacgc tgtaccccgc tgacggcggc ctggaaggca gaaacgacat 5461 ggccctgaag ctcgtgggcg ggagccatct gatcgcaaac atcaagacca catatagatc 5521 caagaaaccc gctaagaacc tcaagatgcc tggcgtctac tatgtggact acagactgga 5581 aagaatcaag gaggccaaca acgagaccta cgtcgagcag cacgaggtgg cagtggccag 5641 atactgcgac ctccctagca aactggggca caagcttaat taagaattcg tcgagggacc 5701 taataacttc gtatagcata cattatacga agttatacat gtttaagggt tccggttcca 5761 ctaggtacaa ttcgatatca agcttatcga taatcaacct ctggattaca aaatttgtga 5821 aagattgact ggtattctta actatgttgc tccttttacg ctatgtggat acgctgcttt 5881 aatgcctttg tatcatgcta ttgcttcccg tatggctttc attttctcct ccttgtataa 5941 atcctggttg ctgtctcttt atgaggagtt gtggcccgtt gtcaggcaac gtggcgtggt 6001 gtgcactgtg tttgctgacg caacccccac tggttggggc attgccacca cctgtcagct 6061 cctttccggg actttcgctt tccccctccc tattgccacg gcggaactca tcgccgcctg 6121 ccttgcccgc tgctggacag gggctcggct gttgggcact gacaattccg tggtgttgtc 6181 ggggaaatca tcgtcctttc cttggctgct cgcctgtgtt gccacctgga ttctgcgcgg 6241 gacgtccttc tgctacgtcc cttcggccct caatccagcg gaccttcctt cccgcggcct 6301 gctgccggct ctgcggcctc ttccgcgtct tcgccttcgc cctcagacga gtcggatctc 6361 cctttgggcc gcctccccgc atcgataccg tcgacctcga tcgagaccta gaaaaacatg 6421 gagcaatcac aagtagcaat acagcagcta ccaatgctga ttgtgcctgg ctagaagcac 6481 aagaggagga ggaggtgggt tttccagtca cacctcaggt acctttaaga ccaatgactt 6541 acaaggcagc tgtagatctt agccactttt taaaagaaaa ggggggactg gaagggctaa 6601 ttcactccca acgaagacaa gatatccttg atctgtggat ctaccacaca caaggctact 6661 tccctgattg gcagaactac acaccagggc cagggatcag atatccactg acctttggat 6721 ggtgctacaa gctagtacca gttgagcaag agaaggtaga agaagccaat gaaggagaga 6781 acacccgctt gttacaccct gtgagcctgc atgggatgga tgacccggag agagaagtat 6841 tagagtggag gtttgacagc cgcctagcat ttcatcacat ggcccgagag ctgcatccgg 6901 actgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag 6961 ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgtgtgccc 7021 gtctgttgtg tgactctggt aactagagat ccctcagacc cttttagtca gtgtggaaaa 7081 tctctagcag catgtgagca aaaggccagc aaaaggccag gaaccgtaaa aaggccgcgt 7141 tgctggcgtt tttccatagg ctccgccccc ctgacgagca tcacaaaaat cgacgctcaa 7201 gtcagaggtg gcgaaacccg acaggactat aaagatacca ggcgtttccc cctggaagct 7261 ccctcgtgcg ctctcctgtt ccgaccctgc cgcttaccgg atacctgtcc gcctttctcc 7321 cttcgggaag cgtggcgctt tctcatagct cacgctgtag gtatctcagt tcggtgtagg 7381 tcgttcgctc caagctgggc tgtgtgcacg aaccccccgt tcagcccgac cgctgcgcct 7441 tatccggtaa ctatcgtctt gagtccaacc cggtaagaca cgacttatcg ccactggcag 7501 cagccactgg taacaggatt agcagagcga ggtatgtagg cggtgctaca gagttcttga 7561 agtggtggcc taactacggc tacactagaa gaacagtatt tggtatctgc gctctgctga 7621 agccagttac cttcggaaaa agagttggta gctcttgatc cggcaaacaa accaccgctg 7681 gtagcggtgg tttttttgtt tgcaagcagc agattacgcg cagaaaaaaa ggatctcaag 7741 aagatccttt gatcttttct acggggtctg acgctcagtg gaacgaaaac tcacgttaag 7801 ggattttggt catgagatta tcaaaaagga tcttcaccta gatcctttta aattaaaaat 7861 gaagttttaa atcaatctaa agtatatatg agtaaacttg gtctgacagt taccaatgct 7921 taatcagtga ggcacctatc tcagcgatct gtctatttcg ttcatccata gttgcctgac 7981 tccccgtcgt gtagataact acgatacggg agggcttacc atctggcccc agtgctgcaa 8041 tgataccgcg agacccacgc tcaccggctc cagatttatc agcaataaac cagccagccg 8101 gaagggccga gcgcagaagt ggtcctgcaa ctttatccgc ctccatccag tctattaatt 8161 gttgccggga agctagagta agtagttcgc cagttaatag tttgcgcaac gttgttgcca 8221 ttgctacagg catcgtggtg tcacgctcgt cgtttggtat ggcttcattc agctccggtt 8281 cccaacgatc aaggcgagtt acatgatccc ccatgttgtg caaaaaagcg gttagctcct 8341 tcggtcctcc gatcgttgtc agaagtaagt tggccgcagt gttatcactc atggttatgg 8401 cagcactgca taattctctt actgtcatgc catccgtaag atgcttttct gtgactggtg 8461 agtactcaac caagtcattc tgagaatagt gtatgcggcg accgagttgc tcttgcccgg 8521 cgtcaatacg ggataatacc gcgccacata gcagaacttt aaaagtgctc atcattggaa 8581 aacgttcttc ggggcgaaaa ctctcaagga tcttaccgct gttgagatcc agttcgatgt 8641 aacccactcg tgcacccaac tgatcttcag catcttttac tttcaccagc gtttctgggt 8701 gagcaaaaac aggaaggcaa aatgccgcaa aaaagggaat aagggcgaca cggaaatgtt 8761 gaatactcat actcttcctt tttcaatatt attgaagcat ttatcagggt tattgtctca 8821 tgagcggata catatttgaa tgtatttaga aaaataaaca aataggggtt ccgcgcacat 8881 ttccccgaaa agtgccacct gac //